BAC Information

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BAC

Clone NameMSMg01-510E17
Chromosome7 (Build37)
Map Location 105,652,915 - 105,787,730
singlet/doubletdoublet
Overlap geneA630091E08Rik, 2210018M11Rik
Upstream geneInts4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215
Downstream geneLOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510E17.T7 (MSMg01no510_e17.b1)MSMg01-510E17.TJ (MSMg01no510_e17.g1)
ACCAG583765AG583766
length738744
length of high quality
(start - end)
665 (74 - 738)292 (325 - 616)
definitionCHROMAT_FILE: MSMg01no510_e17.b1 PHD_FILE: MSMg01no510_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:51 2005CHROMAT_FILE: MSMg01no510_e17.g1 PHD_FILE: MSMg01no510_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,787,187 - 105,787,730)(105,652,915 - 105,653,206)
sequence
GGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAAATCCGC
GGAATTCCTTCATTATCACCAAGCTCTTACATGCAGTGACTCGTTCTCGA
GGCTACCTTTTATATTTCTACTTGATATAATCTTCAAAAGTTTTTTATTT
GCAGTTTTAAACTTCTGATTCTGTTCTGCTCTATACAGTAGTCTTTTGTT
TGTTTGTTTGTTTGTTTTTGAGACAGAATCTGGCCTCAGATTTGTGATCC
TTCTGCTTCAGCCTCCCAAGTGCTAGGCTTACTGGTGTTACCACCATACT
CAACTCTATAAAACAGTTTTTTGTCCAGTTTTTCTTACATTAATGTCTCT
TTTAATTTTATTTTTAAAATTATTTTATTTTTGTTTGCTGTGCTTTTAAT
CATTAGTATTTGATTTTAATTGGTCTTGATATAGTAATAAGAGATTTTCA
TGTAGATTTTTAAAGGTGGTATTTCCCTTTTTTAGACAGGTTTCTAGGTC
ATTGCTAGTTCTTCATATAGTCTAATGATTAAAGCGGTAAAGACTTACAT
TTTATTACCAATTCCATGAGTCATACTATGTAATTTTTTTATATATGCTC
TGTAGAAATTTCCCATCCACATTGCTGTGTATATTTGTCATGTGAATTTT
ATAAAATTACAAAAGAATTGAGGTATTAGGTTAAAAAATATGTTAAGAGT
CATATTGACTGTTAAGTTTTTCTCAGGTTTCTGTAGAT
CCCCGATGATGTGGGTAGCCGGGNGGNCGCCTGGTTTCCAACCTTGGGNG
AACNANAGAAGTTTCCACAAAATTCGTACCCAGAGCCCTCTGTGTGTCTC
TAGGGACTATGAGCTCAGAAAAGATTTCCAGAATTAATGGACCCTGCCCT
CCAGGACTTAGGAACTCTTGGGCTTCTGACTAGTCTTCAGACAGACCCAG
GGGATCCAGAGAGGGCAGGGGACAGCAAAGCATGGAGTGTCCAGAGCACA
TAAGTGCGCTCTCTGGCTAGCCTCTGCTTGTCCTGCTCCCCTTGCCTGGA
GGCCTCTGTCTTATCTTCCTCNCTCTACTCTCCCCATCTTCTCATCCTGT
CTCCCCCCACCCCCACTAGCATCTCCATCTCCCTAGGAACAGTTGTGCTG
AGAACAGGAGGGCTAGGGGGAAGGAGGGGAGGCCTGAGCTGTTTATAGGA
ACTGAAGTGGTTCCCTCCATCAGCTCTGTTTGGAGCACAGACCAAGCATA
ATAAACAGCTTGGCTCCTCCCCAGCTGCGCTTCCCCTGAACTTGGCCATC
CCAACTTCAAGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTTCCTCATTTTTAATCCAATGTTTTTATT
TTTTATAAGACGTGGTGTTACACACTATTCTTCCTTTCCCCCATTTTCTT
TTCTCTCTCTTCTCGTTCTTCAATTTTTCTTTTTCCCTTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_e17.b1 MSMg01no510_e17.b1 CHROMAT_FILE:
MSMg01no510_e17.b1 PHD_FILE: MSMg01no510_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:51 2005
         (665 letters)



>mm_chr7_105786678_105787742
          Length = 1065

 Score = 1021 bits (528), Expect = 0.0
 Identities = 540/544 (99%)
 Strand = Plus / Minus

                                                                        
Query: 122  tttgtttgtttgtttgtttgtttttgagacagaatctggcctcagatttgtgatccttct 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 tttgtttgtttgtttgtttgtttttgagacagaatctggcctcagatttgtgatccttct 994

                                                                        
Query: 182  gcttcagcctcccaagtgctaggcttactggtgttaccaccatactcaactctataaaac 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993  gcttcagcctcccaagtgctaggcttactggtgttaccaccatactcaactctataaaac 934

                                                                        
Query: 242  agttttttgtccagtttttcttacattaatgtctcttttaattttatttttaaaattatt 301
            |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933  agtttgatgtccagtttttcttacattaatgtctcttttaattttatttttaaaattatt 874

                                                                        
Query: 302  ttatttttgtttgctgtgcttttaatcattagtatttgattttaattggtcttgatatag 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  ttatttttgtttgctgtgcttttaatcattagtatttgattttaattggtcttgatatag 814

                                                                        
Query: 362  taataagagattttcatgtagatttttaaaggtggtatttcccttttttagacaggtttc 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  taataagagattttcatgtagatttttaaaggtggtatttcccttttttagacaggtttc 754

                                                                        
Query: 422  taggtcattgctagttcttcatatagtctaatgattaaagcggtaaagacttacatttta 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753  taggtcattgctagttcttcatatagtctaatgattaaagcggtaaagacttacatttta 694

                                                                        
Query: 482  ttaccaattccatgagtcatactatgtaatttttttatatatgctctgtagaaatttccc 541
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 693  ttaccaattccatgagttatactatgtaattttttaatatatgctctgtagaaatttccc 634

                                                                        
Query: 542  atccacattgctgtgtatatttgtcatgtgaattttataaaattacaaaagaattgaggt 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633  atccacattgctgtgtatatttgtcatgtgaattttataaaattacaaaagaattgaggt 574

                                                                        
Query: 602  attaggttaaaaaatatgttaagagtcatattgactgttaagtttttctcaggtttctgt 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573  attaggttaaaaaatatgttaagagtcatattgactgttaagtttttctcaggtttctgt 514

                
Query: 662  agat 665
            ||||
Sbjct: 513  agat 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no510_e17.g1 MSMg01no510_e17.g1 CHROMAT_FILE:
MSMg01no510_e17.g1 PHD_FILE: MSMg01no510_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:51 2005
         (292 letters)



>mm_chr7_105652715_105653406
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactctccccatcttctcatcctgtctccccccacccccactagcatctccatctccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactctccccatcttctcatcctgtctccccccacccccactagcatctccatctccct 260

                                                                       
Query: 61  aggaacagttgtgctgagaacaggagggctagggggaaggaggggaggcctgagctgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaacagttgtgctgagaacaggagggctagggggaaggaggggaggcctgagctgttt 320

                                                                       
Query: 121 ataggaactgaagtggttccctccatcagctctgtttggagcacagaccaagcataataa 180
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggaactggagtggctccctccatcagctctgtttggagcacagaccaagcataataa 380

                                                                       
Query: 181 acagcttggctcctccccagctgcgcttcccctgaacttggccatcccaacttcaagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcttggctcctccccagctgcgcttcccctgaacttggccatcccaacttcaagcat 440

                                                               
Query: 241 ctctctctctctctctctctctctctctctctctctctctctctctctctct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctctctctctctctctctctctctctctctctctctctctctctctctct 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)