BAC Information

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BAC

Clone NameMSMg01-510G12
Chromosome7 (Build37)
Map Location 121,724,628 - 121,725,043
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1
Downstream geneCalca, LOC100043295, Calcb, Insc, EG627967, LOC668472, Sox6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510G12.T7 (MSMg01no510_g12.b1)MSMg01-510G12.TJ (MSMg01no510_g12.g1)
ACCAG583850AG583851
length740817
length of high quality
(start - end)
416 (325 - 740)---
definitionCHROMAT_FILE: MSMg01no510_g12.b1 PHD_FILE: MSMg01no510_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:59 2005CHROMAT_FILE: MSMg01no510_g12.g1 PHD_FILE: MSMg01no510_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCATAATTTGCGGCCGCTAAACGAACACCAATTTCATAACACGCGCG
GAANNCACNGTTATACCTTAAACGGTGATAGCAATGACATTTTTTAAATA
TTCTTTTTCAAAATAATAATGTTTTAAATGTTATCCAGAAGAGTCTTGGG
TTTTGTCAAACCCCTTTCTACATATACAGAGACAACTGCATGGGGCATCT
CTTTTATTCTGTTTAAGTGGTAAATTAAATTGACTTTTGGATGGAAAGAC
CTATCTGTATTTCAAGCACAAACACCATGTACAGGTGAGAAAACACAGGC
CGAGCAGTCCCCTCCCTTCGTTGTGGGAGCAGGAGTGGCTGAGGTGGGCT
TCAGGGCCAGGCTGTCTAGTTCTGTGATTGGCTTCCTATTGCTCTTGCTG
TTTATCTAGGATTACATTTCTATTTGTGGGAGAATTTTGCTTCTAGTTTT
CTTGTCCTGGTAATGTCTTCACAAGTTTTGGTGGGATTAGCTGGGAGGTT
CATCAATGCTTCTCTAGGTATTTGGTCGAGTATATTCCTTTCTTGAAATT
TGCTTTGTAGCCGGAGCCAAGCTACACATACACATCTTTGTCAGACAAGC
GATTACTCATAGTTTCCATTTCCTGAGGTGTAAATTTTAGCAACTTGTCT
GTTTTTCAGTAAATGTCTGTTTTGTCAAGGTTGGCCAAGTTATTGATACT
GTGCTCTTCGTACCATTTCACATCTGTGTGGTCTCTGGTA
GAGAACAATGGGGGGGGTGGGGGGGGGGTGTTCCCAAAATAATCTCCTCA
ATTTTTTTCTCCTAAAAATGAGGGGTGCTTACCAAGCGATACCCGACCCC
CCCTTCCCTTTCTTCTTCGCCCTCCTTTCAAACCGACCAAACCAATTGCA
ATTTAAACTGACAGAGTATAACTAATCCGATATCCACAAAAAGGTCGTTG
GAGTGATGGAGGGGGGGAAGAAGGAATAGGTGAGTTATAAATGCCCTGTG
GAGAGTCCGCCATGGGAGGAGACGAGGAGGGGGGGTGGGCGGTGGAGTTC
CGTCGACCGACCACTCTTTTCTTCGACTGGACAATGGGTGCTCCCTTGGC
GGTTCCCGACCTGACCAATGTGAACCACAGTTGTGGGATGTACCCTACAC
ACGTTTCACTGCTTCTCTTTTCACCGCGCCTCTATGACCCACCGTTTGCA
TTTTCCCCGCCCGGGGTTCCCTTTGCATGTCAACTACTCTTTTACGTTTA
CAATTGGTGTGGCGGGTTCACGTTTCACGCCATTCCCGTGTAACACGTGC
GCCTTTTCAACGACTATTTCTCCCTACTGCCAGTACGGTGGGCTTGCCTT
ACGGACAGGAATGTTCCATGAAGTCCCACGGGAGACCGCCGGTGCGCCGG
TTTCATATACATGGGAGCGGAAAGCGCGCCTTTAATTGGTTAGTAAAGTG
TACGGTCACAGAACCTGTTTTGTTGACTAGCCCACAAATGTGCCGCCGAG
GTTTCGCTCGTCATGGGGTGTGGAGCTAGGATGGTGATACAGTATTTCCA
GGTTGGGTCATGATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_g12.b1 MSMg01no510_g12.b1 CHROMAT_FILE:
MSMg01no510_g12.b1 PHD_FILE: MSMg01no510_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:59 2005
         (416 letters)



>mm_chr7_121724428_121725243
          Length = 816

 Score =  758 bits (392), Expect = 0.0
 Identities = 410/416 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagcaggagtggctgaggtgggcttcagggccaggctgtctagttctgtgattggctt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagcaggagtggccgaggtgggcttcagggccaggctgtctagttctgtgattggctt 260

                                                                       
Query: 61  cctattgctcttgctgtttatctaggattacatttctatttgtgggagaattttgcttct 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctattgctcttgctgtttgtctaggattacatttctatttgtgggagaattttgcttct 320

                                                                       
Query: 121 agttttcttgtcctggtaatgtcttcacaagttttggtgggattagctgggaggttcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttttcttgtcctggtaatgtcttcacaagttttggtgggattagctgggaggttcatc 380

                                                                       
Query: 181 aatgcttctctaggtatttggtcgagtatattcctttcttgaaatttgctttgtagccgg 240
            |||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gatgcttctctaggtttttggtagagtatattcctttcttgaagtttgctttgtagccgg 440

                                                                       
Query: 241 agccaagctacacatacacatctttgtcagacaagcgattactcatagtttccatttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaagctacacatacacatctttgtcagacaagcgattactcatagtttccatttcct 500

                                                                       
Query: 301 gaggtgtaaattttagcaacttgtctgtttttcagtaaatgtctgttttgtcaaggttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggtgtaaattttagcaacttgtctgtttttcagtaaatgtctgttttgtcaaggttgg 560

                                                                   
Query: 361 ccaagttattgatactgtgctcttcgtaccatttcacatctgtgtggtctctggta 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaagttattgatactgtgctcttcgtaccatttcacatctgtgtggtctctggta 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)