BAC Information

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BAC

Clone NameMSMg01-510G15
Chromosome7 (Build37)
Map Location 142,668,553 - 142,668,839
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254, Foxi2
Downstream geneClrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510G15.T7 (MSMg01no510_g15.b1)MSMg01-510G15.TJ (MSMg01no510_g15.g1)
ACCAG583856AG583857
length745957
length of high quality
(start - end)
294 (325 - 618)---
definitionCHROMAT_FILE: MSMg01no510_g15.b1 PHD_FILE: MSMg01no510_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:00 2005CHROMAT_FILE: MSMg01no510_g15.g1 PHD_FILE: MSMg01no510_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCAGAAATCGCGCGGA
ATCCTCAGGGTAGCGGGCAGCCTGGTCCTAATTACAGACCTAGCAAGGGC
CCACAGCAGGTTTCTTTAGAGTCAGAGGTGGAGACCTAGGGGCTCCAGGC
TCTTAGAGCCAAGCATGCTCACAAGCCCGTGCATCCAGTCACCATATCCT
CACTCCAGACACCGTCCCAGAAGCTGGAGGGAATCAAGTCAGTGTCTCAC
TCAGTGTTTCAGCTCTCCGCAGACTGGATGGGATGGATGGTTTGTCTCTC
TTCCAACTGCTAATCTTTCTTCTGGCCAGTGGCCCTGACCCTCTTGATCT
CTGGCCTTTTAGCTTGGCCTGAGCATGCTTATTCACCTCAAGGAGGGCAT
CTCAGGGTAAAAATACCATGGCATCTGCCTACCCAGGGGCTGGCCCTTCC
CTCCCACAAACTCAAAAAACCAGAACCATCTACAGTTAAAGAAAGAATAC
AATGAAGGAAGTAAGAAAGACATCAGCTAAAGGCACTTGCCACCAAGAGG
CTCTGACATACACAGACAGACAGACAGACAGACAGACAGACAGACAGACA
GACACACACACACACACACACACACACACACACATACACACACTAAATAT
GTGAAATACATTTTTGAAGAGGTATGGGGAGTCCTGAGCAGTTGCTAACA
GTATCTGCTCACAGAAGTGAGACCTATGTTTGAGACCCCGTCGGG
AAATGAAAGGAGAAGTGTGGAGGACGGCTCGGCTACCCATCTGGGNGANN
NANAGGAGNTTTGCCAAGAAAAACGGGGGGAGCCANNNNAGGCACCGGCG
CACCAACATGGAACGCCTTCTATTCGCAGAAGTGAACACTGGACTGGCAT
ATCAAACTGCCATCTACATGTGTTAGGTGACCGTGGTTGGCAACGCGATG
CTCGAGGGTGAACTTGTGGTTTCTGGACCCGGAATCAGCTTTCACTTCTT
AAGAACCAGAAATAAGAACACTCTTGTTTTAACCTGGCGGTGTCAAAACT
CTAGAACATCAAGTATGGATTAATACAAGCCATCCGGAAGACGAGACCCA
AACAAACCCTTGTTTTTTTTCTTTTGCCACAAACCCGCCAAGATTACGGG
CGAAGGCGCAACTTCCCTCTCTTTTTCCTCTTGCCCCTACGGCCAAGTGC
CATCCTATTTATTCTTGCCCTGAATTATAGAATTTCTCTACCCCAATTCA
AGCCCCAAGCACATCCACATAACATTTGGGGTGCGCTTCAACCTCCCTAA
GTGGTCCCATGCTTCCCTATGAAGGGGACATTCACAACGAAGCAGATTAT
TACTCAAATGTACCTTCTTCCCTTGTTCCTGAATGGCTTGGCAACCTTGT
ATTTTACTCGCTGTTTCAGAGCCCTCGCTGAATGCGGCTTAACAACCCTG
TGGTTAAACAATCGTNTAGGATGGAACATTTCGGTAATCCTGGCCAATAA
ACACTTCTTAAAATAGTTTTTTGAATATTCCCTCCGGGCATAGATAAAAA
AGCCCGTACTATGTGGTGGCCATGTTATATTGGTTGTTAGAACCACACAC
ACTATTTGGGTGGCGAAGCCTAGATTCTCCCTGTGTGTTCCCCCTAGTCC
CCGCCAATCGCACCTCCATAGATGTTCTTTACGCCATCGCTTCTCCACAC
ATGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_g15.b1 MSMg01no510_g15.b1 CHROMAT_FILE:
MSMg01no510_g15.b1 PHD_FILE: MSMg01no510_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:00 2005
         (294 letters)



>mm_chr7_142668403_142669096
          Length = 694

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccagtggccctgaccctcttgatctctggccttttagcttggcctgagcatgcttattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gccagtggccctgaccctcttgatctctggccttttagcttggcctgagcatgcttattc 378

                                                                       
Query: 61  acctcaaggagggcatctcagggtaaaaataccatggcatctgcctacccaggggctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acctcaaggagggcatctcagggtaaaaataccatggcatctgcctacccaggggctggc 318

                                                                       
Query: 121 ccttccctcccacaaactcaaaaaaccagaaccatctacagttaaagaaagaatacaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccttccctcccacaaactcaaaaaaccagaaccatctacagttaaagaaagaatacaatg 258

                                                                       
Query: 181 aaggaagtaagaaagacatcagctaaaggcacttgccaccaagaggctctgacatacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaggaagtaagaaagacatcagctaaaggcacttgccaccaagaggctctgacatacaca 198

                                                          
Query: 241 gacagacagacagacagacagacagacagacagacagacacacacac 287
           |||||||||||||||||||||||| ||| ||| ||| ||||||||||
Sbjct: 197 gacagacagacagacagacagacacacacacacacacacacacacac 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)