BAC Information

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BAC

Clone NameMSMg01-510J10
Chromosome7 (Build37)
Map Location 124,741,209 - 124,741,874
singlet/doubletsinglet
Overlap geneXylt1
Upstream geneLOC668485, LOC546993, LOC100043330
Downstream geneLOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510J10.T7 (MSMg01no510_j10.b1)MSMg01-510J10.TJ (MSMg01no510_j10.g1)
ACCAG583990AG583991
length743741
length of high quality
(start - end)
666 (78 - 743)362 (326 - 687)
definitionCHROMAT_FILE: MSMg01no510_j10.b1 PHD_FILE: MSMg01no510_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:13 2005CHROMAT_FILE: MSMg01no510_j10.g1 PHD_FILE: MSMg01no510_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGCAAATGCGCG
GAATTCAGCAGATTTCCCTCCATTTAACAAACCCAGAGGTTTCATAGGTC
TACTGTGAGTCATAGTCTTGACAAGATCCAGTCAAGGTCTTGTGATCAAA
CAGAAGAGCTAATAGAACAGGACCTTGAGTTCACTTGTTAATCTGTTGGT
GCCCTGGTGTCCACACTAAGAAGCAGGAGATCTTATGTCCATCTTGAGAT
ATAGTGTTGATGGCTATGGGAGAAGAGATGGAAGGGCCCACATAGAGGTA
GGAAAACCATGGAGAAGGTTTGTGCTTCTGATGCTCCCAGAACCATATCA
ACAGAACTGCTCTCAATCTCCAGGCAGAGGCAAGCATCCAGAAGCCATAG
GAGCTTCCAGAATCCATGCAGCCATTTAGCCTCACAGCTAATATGGCCAG
GCAGCCACCTTCTGCTTGGGGAACTCGAGCCCCACACCTGCGCAGACATC
CTCCTTCAGGAGACTCACAGAGCATTTCCGTGGGAGATGGAGCAAGAACA
GAACAGCCCAGTGACCTGAGACAAGAATTTGGCAGAGCAGGTTCATAAGA
GTTGCTTGTGAGCCAGAGAAATCACAGCCTATAGATTCGAGCAGAATGGA
GGTTGTTTGGAGGTGTCTTCTCTTTGTTTCCTCAGCCATTTTATAATTAT
GGTGAAGCAGTATGTAACTTGAAACTTACTATCTCTGTCATCT
NCCGATGATAGGGGAGGTCTGGCGGCCGCCTGGTTTTCAAATTAGGGTGA
ACTATAGAATTTTCGCAAAAATCTCATTACAGACATGAATGGCAGCCTAT
ATTACATAATTGTAGAAATAAGGTAGGTTGTGGTTTAAAGAGGAACTAGA
GTATTGTGTTATTCATGAAAAGGTTAGTAGAAGGAACTTCCCCGGTGCAT
GTTTTTCACTAGGCCCAGAGGAATAGCATAATTAGATATTTACTAAAGGA
CCCATGGTGGTGGGTTAAACAATAGACTAGAATTGCACCTGAGCATATTC
CCCCTTTCACCTGGATTCTTTGTATAGCTGACTTTAGATAGGGCTGATCT
TATCTCAGTTGTAAACACTGCCTGGTTCCTGTAAGCTTTTATGTATGCTT
TTTCTCTGTTTTGTGTAAAGAGCCATTATGCATCTCTATGTACTTTGGCT
GATGCATCGCCTAACTTCCTTGTTTTTCTTCTGTGTTATAAGTCTGATGC
TCACTTTTGAGAAATTACATTCAGATCAACACTCCTTTGTGTTTGAGTCT
GTTTGTCAACCCACCGAGACCCTGAATTCTCCCACGGGATGAGTCCAGCC
CATGGCATCGATTCTCCCCTCCCCTCCCCCTCCTCTCTCTCCACTCTACC
TTCCCTTGAGACAGAATTTCTCACTGTTTGAGAACTCACCAAGGAGACTA
AGTTGGCTGGCCACTGAGCTCCAAAGATCTGCCTGTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_j10.b1 MSMg01no510_j10.b1 CHROMAT_FILE:
MSMg01no510_j10.b1 PHD_FILE: MSMg01no510_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:13 2005
         (666 letters)



>mm_chr7_124741009_124742074
          Length = 1066

 Score = 1226 bits (634), Expect = 0.0
 Identities = 658/666 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacccagaggtttcataggtctactgtgagtcatagtcttgacaagatccagtcaagg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 caaacccagaggtttcataggtctactgtgagtcaaagtcttgacaagatccagtcaagg 260

                                                                       
Query: 61  tcttgtgatcaaacagaagagctaatagaacaggaccttgagttcacttgttaatctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgtgatcaaacagaagagctaatagaacaggaccttgagttcacttgttaatctgtt 320

                                                                       
Query: 121 ggtgccctggtgtccacactaagaagcaggagatcttatgtccatcttgagatatagtgt 180
           | | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttccccggtgtccacactaggaagcaggagatcttatgtccatcttgagatatagtgt 380

                                                                       
Query: 181 tgatggctatgggagaagagatggaagggcccacatagaggtaggaaaaccatggagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatggctatgggagaagagatggaagggcccacatagaggtaggaaaaccatggagaag 440

                                                                       
Query: 241 gtttgtgcttctgatgctcccagaaccatatcaacagaactgctctcaatctccaggcag 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagtgcttctgatgctcccagaaccatatcaacagaactgctctcaatctccaggcag 500

                                                                       
Query: 301 aggcaagcatccagaagccataggagcttccagaatccatgcagccatttagcctcacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaagcatccagaagccataggagcttccagaatccatgcagccatttagcctcacag 560

                                                                       
Query: 361 ctaatatggccaggcagccaccttctgcttggggaactcgagccccacacctgcgcagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaatatggccaggcagccaccttctgcttggggaactcgagccccacacctgcgcagac 620

                                                                       
Query: 421 atcctccttcaggagactcacagagcatttccgtgggagatggagcaagaacagaacagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcctccttcaggagactcacagagcatttccgtgggagatggagcaagaacagaacagc 680

                                                                       
Query: 481 ccagtgacctgagacaagaatttggcagagcaggttcataagagttgcttgtgagccaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagtgacctgagacaagaatttggcagagcaggttcataagagttgcttgtgagccaga 740

                                                                       
Query: 541 gaaatcacagcctatagattcgagcagaatggaggttgtttggaggtgtcttctctttgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 gaaatcacagcctatagattcgagcagaatggaggttgtttggaggtgtcttctcttcgt 800

                                                                       
Query: 601 ttcctcagccattttataattatggtgaagcagtatgtaacttgaaacttactatctctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcctcagccattttataattatggtgaagcagtatgtaacttgaaacttactatctctg 860

                 
Query: 661 tcatct 666
           ||||||
Sbjct: 861 tcatct 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)