BAC Information

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BAC

Clone NameMSMg01-510K10
Chromosome7 (Build37)
Map Location 103,859,593 - 103,859,808
singlet/doubletsinglet
Overlap geneOdz4
Upstream geneFrda-ps, EG666836, LOC670727, LOC666858
Downstream geneNars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510K10.T7 (MSMg01no510_k10.b1)MSMg01-510K10.TJ (MSMg01no510_k10.g1)
ACCAG584038AG584039
length707783
length of high quality
(start - end)
211 (89 - 299)---
definitionCHROMAT_FILE: MSMg01no510_k10.b1 PHD_FILE: MSMg01no510_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:17 2005CHROMAT_FILE: MSMg01no510_k10.g1 PHD_FILE: MSMg01no510_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCCACTATAATGCGGCGCAAACGAATCCTATTTCTTACCTAGGGGGAAN
CNCNTCTTACGATACTGGGGANGAGGNCCTCTAGNGGCCCCTGGGGCTCT
GTCTGCTGCTTCTGTTCCATCAAAGAGACAGGAGGTGAGAGAAAGTGAGA
TAAGACATAATCCCCCTGCCTCCTGACCACCACCATCCTGCTGCTGAAGA
CCACGCTTCCTAAGCAGCAGCCTGGCCTCCATTCTCTGATAATCACCCAT
GCTTGGGGAAATATCAAGACCCGGTGACATTAGTTCAGAGCCGTGCTGTT
CTTTTTCTCAAAGCACTTGCGNNTGCATCTAGCTTCTTTATTACATTATT
CTCCAATTAAGAACAAATGAACAATCAAACACACAGATAAGCAAGCAAGC
ACAACAACCTACTGCTTGGTAATTTTACTGCCAGGAAGATCACCCCCCCC
AAACTGTTCTATTGTGGGGCAGCTCTGCAGGCTGCAAGACTTTCTTTCAT
GCTGAGCTGAAACATGTTGTGTGAGTCATGATTTCAGCCAGTTTCTTGTT
TGTACAATTTTATTCCTGCCTTACTAGTAGGAAAGTGAGAGCTTAATGAA
TGCAAGGTCCTGTCTGGACGGCATGGTTTTTTTCTGTGGAGGGATGACAC
TGACCAGACTGTGCGGTCTATAGGGTCTGGGCACTTTACCCCTTCCTTCT
AGGCCAG
GGCAGCGATGCAAGTGGGAGGCCGGGNGGGCGCCTGGTTTCCGGACCTGA
NGNGANACNANAGAAGGTTACAAGCAGGGAGGGGGGCNNNAAGGCACCCA
GCGAGACANAACNACCGGACGGCGATTCTCCCCGAGGCAAAGAGAAGAAA
GGACGGCAGGCAGCGCACGGCCGGTTCCAGGCGNGCACGGCGCCCGGGCA
CAACNAGCACCGCGAGAGACAGGGCCAGCCAAAAACAGACCCCAGGGCGG
GGAGACCCACAATTTTCAACTACCGAAATGAAAATCGCCTGGCCACCCAG
CTGCCGGCAAGAGGGCCCCAACATCTGCCTTTTTTTTTGGAAAAGGAGGC
AGCACCAGGCACCAAGGGCTTTTCTATCATCAAAGAACACATCACCAACC
ACCTCTAGACTTGTCCTGTTTGCACCACCTAATCGACACCCCGTCCCATT
CCCCCCCCTCCGCTTCGTGTCCTTTCCCTCCTACTTGCCTTTCCGTGATC
TCTCCATTCCCTACCGCCCGTTCCAGGTACCCCTCCGCCGTTTCTTCTCT
CTTTGCACCTCTACCCATACTTTCGTGACTGACTAGACACCTTAACCCGT
GTACCCCGCATACAACTACCCCTCCAATTCTGCTTCCCATATCCTAGCAT
CCCCCTCAAGCGTCCTCCCCCATCCCCCTCTCTTTCACCCTGTTTTTTTT
ACCCGATTTTATATCACAAAATTTCCCCACCCTCTATGTCCCACCTAGAG
TCCATCACCGCCTAGACCGCCCTGAACACAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_k10.b1 MSMg01no510_k10.b1 CHROMAT_FILE:
MSMg01no510_k10.b1 PHD_FILE: MSMg01no510_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:17 2005
         (211 letters)



>mm_chr7_103859393_103860009
          Length = 617

 Score =  356 bits (184), Expect = e-103
 Identities = 207/216 (95%), Gaps = 6/216 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctggggctctgtctgctgcttctgttccatca--aagagacaggagg--tgagagaaa 56
           ||||||||||||||||||||||| ||||||||||  |||||||||||||  |||||||||
Sbjct: 416 ccctggggctctgtctgctgcttgtgttccatcaacaagagacaggagggatgagagaaa 357

                                                                       
Query: 57  gtgaga-taagacat-aatccccctgcctcctgaccaccaccatcctgctgctgaagacc 114
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtgagattaagacataaatccccctgcctcctgaccaccaccatcctgctgctgaagacc 297

                                                                       
Query: 115 acgcttcctaagcagcagcctggcctccattctctgataatcacccatgcttggggaaat 174
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 296 acgcttcctaagcagcagcctggcctccagtctctgataatcacccatgcttggggaaat 237

                                               
Query: 175 atcaagacccggtgacattagttcagagccgtgctg 210
           |||||||||| |||||||||||||||||||||||||
Sbjct: 236 atcaagacccagtgacattagttcagagccgtgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 617
Length adjustment: 9
Effective length of query: 202
Effective length of database: 608
Effective search space:   122816
Effective search space used:   122816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)