BAC Information

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BAC

Clone NameMSMg01-510M08
Chromosome7 (Build37)
Map Location 85,739,305 - 85,739,621
singlet/doubletsinglet
Overlap genenone
Upstream geneA330068G13Rik, Ntrk3
Downstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510M08.T7 (MSMg01no510_m08.b1)MSMg01-510M08.TJ (MSMg01no510_m08.g1)
ACCAG584129AG584130
length724758
length of high quality
(start - end)
317 (325 - 641)238 (77 - 314)
definitionCHROMAT_FILE: MSMg01no510_m08.b1 PHD_FILE: MSMg01no510_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:26 2005CHROMAT_FILE: MSMg01no510_m08.g1 PHD_FILE: MSMg01no510_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGACCAATATTGCGGCGTCAAACGAATACTAATTCCCACCTGGGCGGAA
NCAGCTTATTACANGACCGGCGGCGGCTAAGAACTTAGGTACAGTGCCAC
TGGGCCAGTGGTAGAGGCGGGGCTATAAGGCCAGTGACCTTTACAGCTGC
TTGAATTTACAGCTAAGTGGTCCTGAGGAAGCTCCAGCATACAGAAGGAT
GGCACAACCCACTGGCTCTTGGTCTGTGAGACTTGAAGAGAGATGTTTAA
CTTCCAACCTGTCCTCTCTCTCCATTCTGGACTTGCTGGTCTCTGGGGAG
CTCACCTTCTTCAATACATGGNGNCTGCTCGGTGCTCATCCCAACATGGA
TGGAATCACTCCACTCCAGGTCTTGTTTTCTCCAGGGTGATGGGCTCGGT
TTCTTCAATGCCCCCTCTAGTGAGCTGATTGTGAATCTCCCAGTCCTGCT
TGGAGTTTGTTTCCAGCACATCGTGCCATTTAATAGATGGCTCTGGAGGT
GGGAGATAGCAATAAAGACTGGAAGCAAACAGACAGAGAAGGAGCAAGGC
AAAGGCTTCAATACGAGCTGTTATTAAATAAATCCCGAAGGAGTTCCCTA
GAACATCCTAAGAGTGGGTGACCAGAGCTGCCCAGAGCTCATTTCTCTCT
CTGAGCTCTTCCTTCACTCATTTCTCTTTGTGGTGGTTAAAGCACAGGGG
GTCCCCTGCATGGGCAGCTATGAA
GCCCCATGAAGTGGGAGGCCGGGCGGCGCCCGGTTTCGTATCTGGGNGAA
CNANAGAAGTTTCCACAAACAGGCTGTCACTGTATGACCCTTAGCAAGTC
ATCCTTACCTTCTGTGGCCGTTACGTGGAATGAGTGTGATTATTTAAATT
AAAAATTATGTTTATTTATCTACACGTACAGATGCAGCAGTGTGTGTGTG
GAAATAAGAGGGCAACTTAGACTACATGGGTTCCCAAGGCTGAACTTTTT
TTGTCAAGCTTGGAAGCAAGCACCTTTACCTGCTCAGCCATCTTGCCGGC
CCAGATGTGCTTTTTAATAATTCATTCATTCATTCATTCATTCATTCATT
CATTCATTCTTTCATTCATTCATTCATTCATTTTGTAGTGCTGGGGGGTT
GAACTCATAGACTCACCATTCTATGCAAACACTTTAGCACTGAGCCACAC
TGTAGCCCTTAAGTGTCTGCATTTAAAGAAGAATCTTCTACCTGTTGCCA
GGGCCCCATTCATTCTGTCTATGAGTGAGGTTGTAGCGGATCCCTCACCC
CCGTGGCGTGCTGGTAGGTAAGCATTTGGAGGTGGTGGATGTGGTGGTGG
GTGTCTTCTTCCATTTTTTTTTCTTGTTCTTCTAAGCCCTTCTTTTTTTT
TTTTTTTTTGCCCCACTCACTTTGTTTTCTTTACCCACTTTTTACCACTT
AATTCACATTCTCTGGTCTTCTTCTTTATCTTTTCATTTTTTTCTTACTT
TAATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_m08.b1 MSMg01no510_m08.b1 CHROMAT_FILE:
MSMg01no510_m08.b1 PHD_FILE: MSMg01no510_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:26 2005
         (317 letters)



>mm_chr7_85739105_85739821
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctcggtgctcatcccaacatggatggaatcactccactccaggtcttgttttctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctcggtgctcatcccaacatggatggaatcactccactccaggtcttgttttctcca 260

                                                                       
Query: 61  gggtgatgggctcggtttcttcaatgccccctctagtgagctgattgtgaatctcccagt 120
           |||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||
Sbjct: 261 gggtgatgggctcggtttcttcaatggcttctctagtgagctgattgtgaatctcccagt 320

                                                                       
Query: 121 cctgcttggagtttgtttccagcacatcgtgccatttaatagatggctctggaggtggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgcttggagtttgtttccagcacatcgtgccatttaatagatggctctggaggtggga 380

                                                                       
Query: 181 gatagcaataaagactggaagcaaacagacagagaaggagcaaggcaaaggcttcaatac 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagcaataaagactggaagcaagcagacagagaaggagcaaggcaaaggcttcaatac 440

                                                                       
Query: 241 gagctgttattaaataaatcccgaaggagttccctagaacatcctaagagtgggtgacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagctgttattaaataaatcccgaaggagttccctagaacatcctaagagtgggtgacca 500

                            
Query: 301 gagctgcccagagctca 317
           |||||||||||||||||
Sbjct: 501 gagctgcccagagctca 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)