BAC Information

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BAC

Clone NameMSMg01-511C01
Chromosome7 (Build37)
Map Location 89,496,761 - 89,496,944
singlet/doubletsinglet
Overlap geneAdamtsl3
Upstream geneCpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511C01.T7 (MSMg01no511_c01.b1)MSMg01-511C01.TJ (MSMg01no511_c01.g1)
ACCAG584398AG584399
length719773
length of high quality
(start - end)
349 (46 - 394)187 (76 - 262)
definitionCHROMAT_FILE: MSMg01no511_c01.b1 PHD_FILE: MSMg01no511_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:53 2005CHROMAT_FILE: MSMg01no511_c01.g1 PHD_FILE: MSMg01no511_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCACCTCATCCCTCCTCCTCCAAGGCTCTGAGAGGGTGCTCCAT
CCTCACCCCCCCCCACTTCACTCCCCCCAGCATTTCCCTGGGGCATCAAG
TCTCTACAGGATTAGGCACATCCTCTCCCACTGATGACAGACTATGCAAT
CTTCTGCTACATATGTGCCAGAGGCCATGGGCCAGCCCATGTATGTTCTT
TGCTTGGTGGCTTAGTCTCTGGGAGCTCTGAGGGTTCCAGGTTAGTTGAC
ACTGTCGTTCTTCCTATGGAGTTGCCATCCCCTTCAGCTCCTTCAATCCT
TTCCCTAACTCTTCCATAGGGATCCCAGACCTCTTACCAATGCTGTATCA
TCATCTGTCTCACCCAGCCACTGGTAGAGCCTCTCAGAGGACATGCTAGG
CTCCTGTCTGCAAGCACAGCGCATCATCACCTAAATAGTGTCAGGGTCTG
ATGCCTGCCCATGGGATGTATCCCAAGTTGGGTTGGTCACTGGATGGTCT
TTCCTTCTTTCTCTGCTCTATTTCTGTTCCTGCATTTCTTTTAGACAGGA
ACTATTCTGGGTCAAATAAATTGAATGTGGTGGGGGTGGTCCCTATCCCT
CTATTGAGGGCCATGTATACTTATCGGACGTGATCTCTTCAGGTTTCATC
CTCTTATACTGTTATGCAG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTTCCTAACAGCTAGGACTAC
CATTCCTCTTAGCGGACTTTTGTCTTTGTAACAATAGCTGGGCCAGCAAA
TGGTGGAGCCAACAAGGAGACAAGGAAGTAGAAGACAGATCACTCCTCAG
TGTGAGAGAACACAGAGGGAAGGAAGGAGGGAAGGAAGGAGGGAAGGAGG
GAGGAAGGATTTCTCCCTTTTCCTTCCTTTTTCCCTTTTTCTCTCTCTCC
TTTTCCTTCCCTCTTCCCTTTTTCTTTTTTTTCCCCCTTTTCTCCCTTTT
TTTTTCTTTCCCCTTTCTCCCTTTCTTTTTTCCCCCCTCCCCTTTTCTCC
CCCCTCCTTCTTTTCTTTCCCCCTTTTCCTCTCTTTTTTCTCCCCCCTTT
CTTTCTTTTTTCCTTCTCCTCCCCTCTCCTTTTTTTTTCCCCTTTTTTCT
CCCTTTTTTCTCTTTTTTCTTTTCCTCCTCTTTCCTCTCCCCCTTTTTTT
TTTCTTTGGGGCGGCCCGGGTGNNTTTGTTTTGTTTTTTTTTTTTTGTTN
ATCCCCTTTCTCTCTCTTTTTCTCTCCCCTCTTCCTTTTTTTTTTTCCTT
TCTTCCCCCCCCCCTTTTCCTTTTCCCCACCCTTTTTTTTTCTTTCCTCA
CCCCTTTTTTTCCTCCTCCCCTTTTCCCTTTCTTTTTTCCTACTTCCCCA
TTCCCCTCTCTATTTTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_c01.g1 MSMg01no511_c01.g1 CHROMAT_FILE:
MSMg01no511_c01.g1 PHD_FILE: MSMg01no511_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:54 2005
         (187 letters)



>mm_chr7_89496607_89497193
          Length = 587

 Score =  348 bits (180), Expect = e-100
 Identities = 183/184 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctttcctaacagctaggactaccattcctcttagcggacttttgtctttgtaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agtctttcctaacagctaggactaccattcctcttagcggacttttgtctttgtaacaat 279

                                                                       
Query: 61  agctgggccagcaaatggtggagccaacaaggagacaaggaagtagaagacagatcactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agctgggccagcaaatggtggagccaacaaggagacaaggaagtagaagacagatcactc 219

                                                                       
Query: 121 ctcagtgtgagagaacacagagggaaggaaggagggaaggaaggagggaaggagggagga 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctcagtgtgagagaacacggagggaaggaaggagggaaggaaggagggaaggagggagga 159

               
Query: 181 agga 184
           ||||
Sbjct: 158 agga 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)