BAC Information

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BAC

Clone NameMSMg01-511F02
Chromosome7 (Build37)
Map Location 82,698,852 - 82,699,175
singlet/doubletsinglet
Overlap geneAkap13
Upstream geneSlco3a1, EG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
Downstream geneKlhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511F02.T7 (MSMg01no511_f02.b1)MSMg01-511F02.TJ (MSMg01no511_f02.g1)
ACCAG584542AG584543
length938721
length of high quality
(start - end)
---564 (76 - 639)
definitionCHROMAT_FILE: MSMg01no511_f02.b1 PHD_FILE: MSMg01no511_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:09 2005CHROMAT_FILE: MSMg01no511_f02.g1 PHD_FILE: MSMg01no511_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACGGTGGGCCCCCNNCCTCTTCCCCCCCCCCCCCCCANNNNCCCCCNNN
NNCNNCNNCCCNNNNNCCCACCCCCCNNNNNNNCCCNNCCNNCCCCCCNN
NNNNNNNNCCCNNNNCCCCCCCNNNNNCCCCCCCCCCCCCNNNNNNCCNN
CCNCCCCCCCCNNNNNNNCACTTTTCTCCCCNNCCCCCCNCCCCTAAAAA
ACCCNAAACCCTCCACCCTTATTTCTTCCCCCCAAAAAAAGGAAAANNCC
NGNNCCGGGNNAAAAANTTCCCCCTCCCCCCTTTTCCCCCCCGGCACATT
TACCCCCCATCCCTGCCTTCCATGCCCGTACCAGGCGGGAACAACCAAAA
AANNNTTNNNTTNNTTTTTNTNNGTGTTTTTTNTTTTGATGAGAGGCGGG
GGGGGGGGGGGGCGAGGGCGGGGAGGGGGCGTGAGGGGCAGCTTNTNGGA
TTNTNGGAGTTCCCTTTTTNNNNNNNNNTNNNNNNTNNTTTTTNNNGGNN
GGGGGCCGGGGGGNNNNNNNNNNNNNNTNNNNNNNNGGGGTTTGTGTTGG
GGTGGAGTNNNNNCCGNNNNNNNNNTNTNTTNTTTTTTTGTGGGGGGGGG
GGAGAAGCACCGGGGGNTNNTTAATGGTTNTTNTGGGNTCCNNNNNNNNN
NNTTTTTTNNTTTTTTTTNTTTTTTTTTTTTTTCGNCNNNTTTTNTTTTT
TTTTTTTTTTTTTAAAAAANNTNNNNTTTTTNTTTTTNTAAAAATNTNNT
NTTNTTTTTNTTTNNNNNNNNAAAAAAACCAAAANNNNNNNNNNTNTAAT
TATTTTTTAAAAATANTTANTTTTTTTTTTTTTTNACAAANAAAAAAAAA
AATAAAGTNNNNNNNNNNNTNCNNCCNNNNNNNTNNAAATNTNGGGTGTG
GTTTGTTGGGTGTGGTGTGTGCAATAACCAAAACAAAG
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCCCAGCTGCCAGATGCTCTGTA
TATCACATGGGGTCAGCAGTTAATCCAAACAGAGTTTTGTGAAGGGCTCC
AAGGATATACAAGAGCCAACAGCTCTTTCTTGGTTTAAAAAGGAGTAAAC
AGAGCCAGGGAGATAGGTTAGTGAGTAAGGGTGTTTTCACCCAAGCCTGC
AGACCTGGCTGGATCCCACTGGCCCACACATTAAGAAAGAGAATTAACTC
CTGCAAGTTGGCCTCTTGACATCTATGGGCATACTGTGGCACTTGTGTGC
TTCCATACACATAAAATAAATAAATAATGGATGAATGGATGAAAACATAA
ATAATTAATTTTTAAGAAAGTGAACAAGGAAGCTGGAGATGGCTAGAGGA
CCTGAGTTCAGCACCTATGCTGGCCATGGGTGGTTCACAGCTGCCACAGC
TCCAGGTCTAAAGGATCTGATGCCCTCTTGTGGCTTTTTCAGGCTTCTGC
ACTCAGTTGACACAGTCACACACACACACATAAATAAAGGTTTTAATTAA
AAACAAATTGATGGTCTCACTTTCAAATGACAAAGCATGTCTCAAAGAAG
CAATGGAAAACTTCCATCCTCAAGCAAACACACTGGTAACTTTAAATATA
AATCCTACCCCAATTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_f02.g1 MSMg01no511_f02.g1 CHROMAT_FILE:
MSMg01no511_f02.g1 PHD_FILE: MSMg01no511_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:09 2005
         (564 letters)



>mm_chr7_82698852_82699815
          Length = 964

 Score =  627 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccccagctgccagatgctctgtatatcacatggggtcagcagttaatccaaacagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caccccagctgccagatgctctgtatatcacatggggtcagcagttaatccaaacagagt 265

                                                                       
Query: 61  tttgtgaagggctccaaggatatacaagagccaacagctctttcttggtttaaaaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttgtgaagggctccaaggatatacaagagccaacagctctttcttggtttaaaaaggag 205

                                                                       
Query: 121 taaacagagccagggagataggttagtgagtaagggtgttttcacccaagcctgcagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 taaacagagccagggagataggttagtgagtaagggtgttttcacccaagcctgcagacc 145

                                                                       
Query: 181 tggctggatcccactggcccacacattaagaaagagaattaactcctgcaagttggcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tggctggatcccactggcccacacattaagaaagagaattaactcctgcaagttggcctc 85

                                                                       
Query: 241 ttgacatctatgggcatactgtggcacttgtgtgcttccatacacataaaataaataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  ttgacatctatgggcatactgtggcacttgtgtgcttccatacacataaaataaataaat 25

                                   
Query: 301 aatggatgaatggatgaaaacata 324
           ||||||||||||||||||||||||
Sbjct: 24  aatggatgaatggatgaaaacata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)