BAC Information

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BAC

Clone NameMSMg01-511F11
Chromosome7 (Build37)
Map Location 37,899,045 - 37,899,565
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043872, EG668988, LOC668507, Tshz3
Downstream geneLOC100043874, Zfp536, LOC100043453, EG627844, C80913, Ccne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511F11.T7 (MSMg01no511_f11.b1)MSMg01-511F11.TJ (MSMg01no511_f11.g1)
ACCAG584560AG584561
length722741
length of high quality
(start - end)
515 (70 - 584)468 (76 - 543)
definitionCHROMAT_FILE: MSMg01no511_f11.b1 PHD_FILE: MSMg01no511_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:11 2005CHROMAT_FILE: MSMg01no511_f11.g1 PHD_FILE: MSMg01no511_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGG
AATTCCTCCTTCTCCAAGGATAGCCTTGAAACACAGCAATTCTTTGGCCT
TTTATTTCCCTGTGGGCAACTCCAAGGGCTTCCCTGAGTCACATACACAC
ACACACACACACACACACACACACACACACACACACACACAAACCAGGAA
GTCCCGGTTCCCTGAGTCCTCCCAGGGCATACAGTAGAAATGAGTCCACA
AAGGATAGGATATAGGTTACCCCAAATCATAGCACTGATTGATGGATGAG
TCTAACCTAGAATTCTGATCTCTCAGTTTCAACACTTCTTGGGGGAAAAA
ATAAATCAGCATTAAAAGTAACCTTGAAAACAAAGAGAAGAAAAGATTGT
GTTAATATTAATTGTGTTCACTTTTGAGAACTTAAGTAACATACAAAAAC
TGAGATAAACATTCAAAAGGCACTACCTCCAGACCCATCAGCTACATCTT
AGGCACTCGCCATTGTAATGCTTCCGCCAAGGATCTCTTGACAGTCCCAG
AGACCCTCCCAACACCAGTCTACACACTGTGGACCCTCAGGGCTGCAAGG
TTATACTGGCCATCTTATAGCGGTTGACAGCATGCTGCTCAGCTCACTAA
ATGCCAATGGCATCTTATTCTTTTGTAAAACCCCAAAATGGCTGCAGTGT
TTAACATGTGTCCTTCAGGAAC
CGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCCTTTTCCCTCCTTCTTTCA
TGTTTGTGAGGGGGAGCCCATGCATGTGTGCACATGTAGAGGCCAGAGGG
GGCTGTCATGTATCTTCTTCTATGGCTCTCTGCTTCATTCCCTCAAGACA
GGGTCTTTCACTGAACTTGAAACGCACTATTTTGGCTAGGCTGGTCAGAG
ATGCCCTAGGCTTGGTCTGGCAGCCAGCAGTGTCCTGGGTTCTGCCTGTC
TCTGCCTTTCCAGCACTATGGTTAGGGACATGTATGTCTATGCCAAGCTT
TTTTACATTGATGCTGGAGATTTGAATTCAGGTCTTTGTGCTTGTGCATC
CAGTACTCTTACCTACTAAACCAGGCCCCCCAGCTCTGTGGTCAGTATTT
TCTTGAAGGCAAGTACCCTCTCCAGAAAGTCCTATATATTATAATATATA
TATATATATATATATATATATATATATATATATATTTATACATATTTAGA
TATATCGCACTTTCTTTCATGCGTGTTTGTTTATTTGAAAAACCTTTTTA
TAGCCGATGGCGCGTTCTGATTCTAAGCGTTTTATTTCCGGACGTTTTCC
TTCTCTAATTCTGCCCCTTTCTCTTTTTTTTAACGCTTATACAGCTTTTG
TTTAATTTTTTACTCCCCCCATCTTCACATTTGGGCAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_f11.b1 MSMg01no511_f11.b1 CHROMAT_FILE:
MSMg01no511_f11.b1 PHD_FILE: MSMg01no511_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:11 2005
         (515 letters)



>mm_chr7_37898851_37899765
          Length = 915

 Score =  957 bits (495), Expect = 0.0
 Identities = 512/521 (98%), Gaps = 6/521 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagccttgaaacacagcaattctttggccttttatttccctgtgggcaactccaagggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 195 atagccttgaaacacagcaattctttggccttttatttccctgtgggcaattccaagggc 254

                                                                       
Query: 61  ttccctgagtcacat------acacacacacacacacacacacacacacacacacacaca 114
           |||||||||||||||      |||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttccctgagtcacatacacacacacacacacacacacacacacacacacacacacacaca 314

                                                                       
Query: 115 cacacacaaaccaggaagtcccggttccctgagtcctcccagggcatacagtagaaatga 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cacacacaaaccaggaagtcccggttccctgagtcctcccagggcatacagtagaaatga 374

                                                                       
Query: 175 gtccacaaaggataggatataggttaccccaaatcatagcactgattgatggatgagtct 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtccacaaaggataggatataggttaccccaaatcatagcactgattgatggatgagtct 434

                                                                       
Query: 235 aacctagaattctgatctctcagtttcaacacttcttgggggaaaaaataaatcagcatt 294
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aacctagaattctgatcgctcagtttcaacacttcttgggggaaaaaataaatcagcatt 494

                                                                       
Query: 295 aaaagtaaccttgaaaacaaagagaagaaaagattgtgttaatattaattgtgttcactt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaaagtaaccttgaaaacaaagagaagaaaagattgtgttaatattaattgtgttcactt 554

                                                                       
Query: 355 ttgagaacttaagtaacatacaaaaactgagataaacattcaaaaggcactacctccaga 414
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttgagaacttaagtaacatagaaaaactgagataaacattcaaaaggcactacctccaga 614

                                                                       
Query: 415 cccatcagctacatcttaggcactcgccattgtaatgcttccgccaaggatctcttgaca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccatcagctacatcttaggcactcgccattgtaatgcttccgccaaggatctcttgaca 674

                                                    
Query: 475 gtcccagagaccctcccaacaccagtctacacactgtggac 515
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gtcccagagaccctcccaacaccagtctacacactgtggac 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)