BAC Information

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BAC

Clone NameMSMg01-512F07
Chromosome7 (Build37)
Map Location 6,495,788 - 6,496,149
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328
Downstream geneOlfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512F07.T7 (MSMg01no512_f07.b1)MSMg01-512F07.TJ (MSMg01no512_f07.g1)
ACCAG585315AG585316
length522701
length of high quality
(start - end)
66 (58 - 123)360 (70 - 429)
definitionCHROMAT_FILE: MSMg01no512_f07.b1 PHD_FILE: MSMg01no512_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:27 2005CHROMAT_FILE: MSMg01no512_f07.g1 PHD_FILE: MSMg01no512_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXTTCTGGGAGAGGACCGCGGATTCTT
ATCTGCGCAGAAGAGCCCTATGAATGTAACGAATGGTGGGAAGACCTTTA
NGGGAGAGTTCCNCAGCTGACTANTTCATNCANAAGGAAAACCCACNCCC
GGGGAGAAAACCTTTTGAATGTAAGCAGTGTGGNTAAATTTTTTCATAGA
AGNCCCTATCTTTGCCNAACNTCAGGAAAAGCCCCTCCCGGGNNNNNAAN
NCNAAGATATTGTTACCAAAAGGAGGGAAAAGCCTTCTCATCCTGGCNCG
CCTTATTGTATAANAACACCCNGAGGGTGCCCCCAAAACNNNNNAGAGNA
AACCCCTTAAAAAAAGGGGCGGAAAAGGTGTNANNAGGGGCCTTTGGGGT
GTTGGGGCCTCCCCCCCCGGGGGGATCGNNNNNANAAAAACTCTCACCCC
GGGGGGCAAAGAGCCCCCTTGGTTGTTGNTAAAAAAAATGCGCTAACACC
CCCCCCCCCTAAAAAAAAATCC
ACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGAAACCCT
GTCTCAAAAAAACCAATAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAATAAATAAATAATCTTTTTAAAAAGATACTAAATGTCACTT
CTGGCTTCCATGAACACATGTTCACCTGCACCCAACCACCCACATGAAGT
GTGTGCACACAGAAATAAGCGGGAAGCAAATCTTTCCAACAAGCCTCGAG
AACAACATGTTAAGAGAAATAAGCAAGACACTAAAATTTGATGCTTCTGT
GAATAAGTTTTTTAGATATGAGATTACAGTAACAAAGTATGATAGAGTGG
ACTTGAAAAGGACAAGATTTTGGTTATAAATTTNAAAGTTCTGGGCTTCT
AATGCACAGCACAGCAGCAGCTATATTTCATAAAAGTATGGTCTGTATTT
GATATTTGCCCCAGAACATAANATTCCCAAGTACACTTTACCCCCAACCC
TCAAATTTTAACAAATGGGAACAAAAACCCAGAATAAAATTTGCCATTTA
TAAAAAAAAGAAAACATTCTTAAAAAATTATTAATCTGGAAACCAAAAGG
TTTTCTTTCCAAAAAACTTGGGTTCAAAAAAATCTCCCTTTCAAAACCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_f07.g1 MSMg01no512_f07.g1 CHROMAT_FILE:
MSMg01no512_f07.g1 PHD_FILE: MSMg01no512_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:27 2005
         (360 letters)



>mm_chr7_6495526_6496285
          Length = 760

 Score =  580 bits (300), Expect = e-170
 Identities = 344/374 (91%), Gaps = 26/374 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctatacagagaaaccctgtctcaaaaaaaccaataaataaataaat 60
           |||||||||||||||||||||||||||||||||||||||||||||            |||
Sbjct: 624 caggacagccagggctatacagagaaaccctgtctcaaaaaaacc------------aat 577

                                                                       
Query: 61  aaataaataaataaataaataaataaataaataaataaataatctttttaaaaagatact 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 576 aaataaataaataaataaataaataaataaataaataaataatcttttaaaaaagatact 517

                                                                       
Query: 121 aaatgtcacttctggcttccatgaacacatgttcacctgcacccaaccacccacatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 516 aaatgtcacttctggcttccatgaacacatgttcacctgcacccatccacccacatgaag 457

                                                                       
Query: 181 tgtgtgcacacagaaataagcgggaagcaaatctttccaacaagcctcgagaacaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 456 tgtgtgcacacagaaataagcgggaagcaaatctttccaacaagcctcgagaacatcatg 397

                                                                       
Query: 241 ttaagagaaataagcaagacactaaaatttgatgcttctgtgaataagttttttagatat 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 396 ttaagagaaataagcaagacactaaaatttgatgtttctgtgaataagttttttagatat 337

                                                                       
Query: 301 gagattacagtaacaaagtatgatagagtggact-------------tgaaaagg-acaa 346
           ||||||||||||||||||||||||||||||||||             |||||||| ||||
Sbjct: 336 gagattacagtaacaaagtatgatagagtggactggagtgatgtctgtgaaaaggtacaa 277

                         
Query: 347 gattttggttataa 360
           ||||||||||||||
Sbjct: 276 gattttggttataa 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)