BAC Information

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BAC

Clone NameMSMg01-513A17
Chromosome7 (Build37)
Map Location 4,189,554 - 4,190,206
singlet/doubletsinglet
Overlap geneEG232801
Upstream geneNlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521
Downstream geneNcr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513A17.T7 (MSMg01no513_a17.b1)MSMg01-513A17.TJ (MSMg01no513_a17.g1)
ACCAG585862AG585863
length849763
length of high quality
(start - end)		164 (32 - 195)657 (66 - 722)
definitionCHROMAT_FILE: MSMg01no513_a17.b1 PHD_FILE: MSMg01no513_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:24 2005CHROMAT_FILE: MSMg01no513_a17.g1 PHD_FILE: MSMg01no513_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCGCTAAACAACTCACTATTCAAANAGGATCCGCGGAATTCCACAAG
ACTTCTCAACAAAGACTCTAAAAGGAAGAAGGGCCTTGACAGTCTCTCAG
AGACCACGAATGCCAGCCCAAACTACTATAACCCACCAAAACTTTTAATC
ACCATACATAGAAAAATCAAGATATTACCAGACAAAGTCAAATTTAAACA
ACTCCCAGCCCCANCAGAAAAGTACTANAANGGNAAAAACTCTAACCCAA
GAAGGGGTAACTAGGACCCATTAAAAACAAAGGGAATAAAAAAAGACCCC
CCCANCAAAACCTAAGGGGGGGAACCCCCCCCCCCCCCCCCCAAAACAAC
CCCCCTAATAATAGGGATCCTGGGGGGNNNNNNNNNTTTTTTTGCTGCGG
GGGGGGGGGGCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGNNNGNNCTGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGG
GGGGGGGGNNNNNNCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNANNNNGGGTGGGGGTGGGTGGNNNACTAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGNNNNNNNNNNAAAAAAAAANAA
AANANNNNNNNNNNNNANNAANNNNNANANAAAAAAAAAAANNAAANANN
NNNNAAAAANNNNANNNNNANAANNNNNNNNANNNNNNNAAAAAAAAAAN
NNNNNAANNNNNAAAAANAAAAAAAAAAAAATTGGAGGTGGGGGGGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACAACATTGCTGGGCTGGGTGGACAGACTGGGTTT
ACTATAGAGTCCTAGAAGAGAAAGTTGTAGCGTGTTAAGTGGGACTATCC
AGGCTGCATTGCCTTCCAGTGTTGAGCTGTGAGACAGGACACTCTTGAAA
GTAGACCCCTTTCCTGAGGTGCATAGCTTGGGACTGAGTGTTCTCTCACC
TGTCACTGCAAGCTCTAGAGGGTCACTGTGCTCTGACCACCCAGTGGGGG
TCTTATAGTAACAGCGATATATCCCTCCAGATCGTTGTTCAATTGATGGG
ATCAAGAACTGAGCTTTGTTTGTGGTCTTCGGAGTGTTCTGTGTGCGCCA
AGGATGTGGACCCCCCTCTTTATAAAGACGGTATTCCCGGGCCCCTGTGG
TCACCTCACATGAGATGGTCACCTGCTTCCCTTTGGCAACCACCAATCCT
GGCTGAACACTAAGGGTTGGCTTGTGGGGATTCCCTGCAAAGAAATGAGG
GAAACAGTCATACAATATCGCCCCTCGATCTCAGCCTTCAGCTCTAGTAC
CCAGCTCTTCCCCGGTATCATCTGATGTTCTCGAGCCCCACTGAGCGGGG
GAAGCTTCAGTTCCCGAGTGAGGAGTGATCTGGAGCAGTACTCACCTTCC
GACATGGAGGTCTCTTGGCCCAGATTCAGCCCTAGAAGAGATCCGCTATG
AAAAGTTTGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_a17.g1 MSMg01no513_a17.g1 CHROMAT_FILE:
MSMg01no513_a17.g1 PHD_FILE: MSMg01no513_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:25 2005
         (657 letters)



>mm_chr7_4189354_4190406
          Length = 1053

 Score = 1197 bits (619), Expect = 0.0
 Identities = 646/657 (98%), Gaps = 4/657 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaacattgctgggctgggtggacagactgggtttactatagagtcctagaagagaaagt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 853 acaacattgctgggctgggtggacaggctgggtttactatagagtcctagaagagaaagt 794

                                                                       
Query: 61  tgtagcgtgttaagtgggactatccaggctgcattgccttccagtgttgagctgtgagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tgtagcgtgttaagtgggactatccaggctgcattgccttccagtgttgagctgtgagac 734

                                                                       
Query: 121 aggacactcttgaaagtagacccctttcctgaggtgcatagcttgggactgagtgttctc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 733 aggacactcttgaaagtagacccctttcctgaggtgcttagcttgggactgagtgttctc 674

                                                                       
Query: 181 tcacctgtcactgcaagctctagagggtcactgtgctctgaccacccagtgggggtctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcacctgtcactgcaagctctagagggtcactgtgctctgaccacccagtgggggtctta 614

                                                                       
Query: 241 tagtaacagcgatatatccctccagatcgttgttcaattgatgggatcaagaactgagct 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tagtaacagcgatatatccccccagatcgttgttcaattgatgggatcaagaactgagct 554

                                                                       
Query: 301 ttgtttgtggtcttcggagtgttctgtgtgcgccaaggatgtggacccccctctttataa 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 553 ttgtttgtggtcttcggagtgttccgtgtgcgccaaggatgtggacccccctctttataa 494

                                                                       
Query: 361 agacggtattcccgggcccctgtggtcacctcacatgagatggtcacctgcttccctttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agacggtattcccgggcccctgtggtcacctcacatgagatggtcacctgcttccctttg 434

                                                                       
Query: 421 gcaaccaccaatcctggctgaacactaagggttggcttgtggggattccctgcaaagaaa 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 433 gcaaccaccaatcctggctgaacactaagggttggcttgtgcggattccctgcaaagaaa 374

                                                                       
Query: 481 tgagggaaacagtcatacaatatcgcccctcgatctcagccttcagctctagtacccagc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 373 tgagggaaacagtcatacaatatcgcccctcgatctcagccttcagctctagtaccc--- 317

                                                                       
Query: 541 tcttccccggtatcatctgatgttctcgagccccactgagcgggggaagcttcagttccc 600
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 -cttccctggtatcatctgatgttctcgagccccactgagcgggggaagcttcagttccc 258

                                                                    
Query: 601 gagtgaggagtgatctggagcagtactcaccttccgacatggaggtctcttggccca 657
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagtgaggagcgatctggagcagtactcaccttccgacatggaggtctcttggccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1053
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1043
Effective search space:   674821
Effective search space used:   674821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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