BAC Information

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BAC

Clone NameMSMg01-513C22
Chromosome7 (Build37)
Map Location 92,009,571 - 92,010,106
singlet/doubletsinglet
Overlap genenone
Upstream geneMesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291
Downstream geneLOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513C22.T7 (MSMg01no513_c22.b1)MSMg01-513C22.TJ (MSMg01no513_c22.g1)
ACCAG585963AG585964
length762762
length of high quality
(start - end)
579 (40 - 618)536 (69 - 604)
definitionCHROMAT_FILE: MSMg01no513_c22.b1 PHD_FILE: MSMg01no513_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:35 2005CHROMAT_FILE: MSMg01no513_c22.g1 PHD_FILE: MSMg01no513_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GCCAGATCTTCACAGAAAACATGATAGCAATATTTCTAAAATTATTCCAT
AATATAGAAACAGAAAAAACACTACATAATTTATTATATGAAGCCACAAT
TACACTGACACCTAAAACACACAAGAACCCATACAAAATGAAACCTCCAG
ACCAATCTACCTCATGAATATCAATGGATAAATTCTTAATATGATTCTTG
CAAACTGAATCCAAGAACACATCAAAACCTGTGAGGAGCCGCCCTCACAT
TTGCCATTATAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACATAA
TCTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTTCTCA
TGATGACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACGTCC
TAGGCGGAGGATAATTCTCCTTAAAAGGGACGGGGTTTTGCTTTCTTTTT
CTCTCTCTTGCTTGCTTGTTCTTGCTTTTTCTCTCTCTTGTTCTTGTTTT
TTCTCTCTCTTGTTCTTGCTTTCTTTTTCTCTCTCTTGCTTTCTTGTTCT
TGCTTTTTCTCTCTCTTGTTCTTGTTGTTCTTCTTGCTCTTGTTCCTTTT
CCCTCTCTTGCTTTCTTGTAAGAGTTGGTGCTGAGACCCGGGAAGAAAGA
ACCGGGACGAATAACCCATGACGAGAAACTCTGGACGGGACGAAAGACCT
GGGACGAGAAAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAACTTTTCTCTGAGTGGGGCTTTTAGTTGAT
ATAAATCCCGTTCAAGTCAATTAGAAAAATCATCTATGTGTGGGCTTTAA
GGACATCATTGCCACACAGGAGATGGTTAGTAGGAAAGTAACTAATGTGT
TAAAGCAAGGAAGGCAAATTTATTATTTTGAGATATTCTCCTTATTCATT
GAATATTTTATATTTTTATTGAATATTTTATTTATTTACATTTCAAATGT
TAGCCCCTTTCCTGATTTCCCCTTCACAAACCCTATATATTATCCTCCCT
CCCCCTGCTTCTATGAGGGTGCTCACCTACCCAACCACACACTCCTGGCA
ACCATCCCTGGCATTCCCCTACACTGGGGCATGGAGACTTCCTAGGATCA
AGGACCTCTTCTCCCATTGATGTCTGACGAGGCCATCCTCTGCTACATAT
GTGGCCAGAGCCATGGGATTCTCTATGTGTACTCTTTGGTTGGTGATTTA
GTTCCTGGTAGCTATGGAATGTCTGGTTGGTTGATGTTGTTCTTCCTATG
GGTTGATAAATATTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCAATATTCCCCCCCTCTCTCTTTCTTTCTTCCTCTCCNTCCCTCTCTT
CTTTCTTTTAAAAATAAATCTGATGTATTTGTATCTCAGACTTTCCTCAA
ATCTTAATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_c22.g1 MSMg01no513_c22.g1 CHROMAT_FILE:
MSMg01no513_c22.g1 PHD_FILE: MSMg01no513_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:35 2005
         (536 letters)



>mm_chr7_92009371_92010306
          Length = 936

 Score =  975 bits (504), Expect = 0.0
 Identities = 528/536 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacttttctctgagtggggcttttagttgatataaatcccgttcaagtcaattagaaaa 60
           |||||||| ||||||||||||||  |||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaacttttttctgagtggggcttccagttgatataaatcccgtccaagtcaattagaaaa 260

                                                                       
Query: 61  atcatctatgtgtgggctttaaggacatcattgccacacaggagatggttagtaggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatctatgtgtgggctttaaggacatcattgccacacaggagatggttagtaggaaag 320

                                                                       
Query: 121 taactaatgtgttaaagcaaggaaggcaaatttattattttgagatattctccttattca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 taactaatgtgtttaagcaaggaaggcaaatttattattttgagatattctccttgttca 380

                                                                       
Query: 181 ttgaatattttatatttttattgaatattttatttatttacatttcaaatgttagcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaatattttatatttttattgaatattttatttatttacatttcaaatgttagcccct 440

                                                                       
Query: 241 ttcctgatttccccttcacaaaccctatatattatcctccctccccctgcttctatgagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctgatttccccttcacaaaccctatatattatcctccctccccctgcttctatgagg 500

                                                                       
Query: 301 gtgctcacctacccaaccacacactcctggcaaccatccctggcattcccctacactggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgctcacctacccaaccacacactcctggcaaccatccctggcattcccctacactggg 560

                                                                       
Query: 361 gcatggagacttcctaggatcaaggacctcttctcccattgatgtctgacgaggccatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatggagacttcctaggatcaaggacctcttctcccattgatgtctgacgaggccatcc 620

                                                                       
Query: 421 tctgctacatatgtggccagagccatgggattctctatgtgtactctttggttggtgatt 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgctgcatatgtggccagagccatgggattctctatgtgtactctttggttggtgatt 680

                                                                   
Query: 481 tagttcctggtagctatggaatgtctggttggttgatgttgttcttcctatgggtt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 tagttcctggtagctatggaatgtctggttggttgatgttgttcttcctctgggtt 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)