BAC Information

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BAC

Clone NameMSMg01-514J18
Chromosome7 (Build37)
Map Location 137,154,214 - 137,154,745
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043144, Ppapdc1a, Brwd2, LOC100043150
Downstream geneFgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514J18.T7 (MSMg01no514_j18.b1)MSMg01-514J18.TJ (MSMg01no514_j18.g1)
ACCAG587053AG587054
length755756
length of high quality
(start - end)
611 (38 - 648)612 (68 - 679)
definitionCHROMAT_FILE: MSMg01no514_j18.b1 PHD_FILE: MSMg01no514_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:34 2005CHROMAT_FILE: MSMg01no514_j18.g1 PHD_FILE: MSMg01no514_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTG
CAAATCCTGTTCAAGGCAGTACTCGGCAACATTTTCTTTCTCAAGTGAAT
AAATCAAATCAGCTTGCGGTAAATATTGTGACGGTATGGAAACGACTGTG
CCAATGTTTTTTGTTAATTGAAATGTATTATATTTATTTATTTGTATGCG
TGGTGGCTGGGGAATTTATGCACACACGTGAGTGTGCTCATGCCATGCAT
GTATGTGGAATTGACTCTTCTCTTCCACCTCGTAGAGCCGGAGGATCTAA
CTTTACCATCTGGCTTACTGGCAGTTGCCTTTATCCGCTAAGATGCCTCA
CTGCCCTCCAGAACTTCCTTCTTTTATTTTTGAGACAAGGTTCTTATGTA
CCCTAGACTGGTCTGAACTTGCTACCTAGCTGAAGCTGGCCTTAAACACC
TGATCTTCTTACCTCTATCATCCCAGGACCTGAATTCTAGTGTATCCCAG
TGTGCCTGGCTATGAACCAAACTTCTGTCCCCAAGGATTTGCTTTCTGGT
ATTCTGGGAACTGAGAGTAAAGAATATGTGGGTACAGCAAGAAGACGGGA
GAAAAGACAGAAGAGAGAAAAGAACGGGGTTCTGTGATGATGATAAACAG
CCGGAGCCGTAAACCACCTGAGGTGTGTAGGGAATGGTCAGCAAAGTTGG
AAGTGGGACCTTGTGCCTGCTATGGGAAGGTGGCTGCACATAGCAGACCG
AAGAT
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGCTCCCCTGCCTCTGCCTCTCAAGGGCTGGT
ATGACAGGCATGCTCCACCATGCACAGCTGGTTTGTTAGTATTTCACAGA
GGATTTCTGCCTCTGTGTTCATCAGAGATATTGCCCTATGGCTTTCATTT
GTGGGGGGAGCCTTTGTCTGACTTTGGTCAGGAGAGTGCTGAAGAGACAT
CCTTACCCCATACATGCTATCTGCATTCACAACATCCAAAGTAGAGAATT
AGCCTACGTGTCCCTCAGTGGATGAACGGATAAAGAAAATGTGTTATAAA
TACACAACAATCCTATCCAGTCTTCAAAAAGAATGGAATCCAGTCATTTA
GAACAGTGTAGACCAGAGGTTCTCAATCTTCCTAATGCTGTGACCCTTTA
ATACAGTTCTCATGCTGTGGTGACCCCCAAACATAATGCTTTGACGCGAC
TTCATAACTGTAATTGTTCTACTGTTGTGAATCATAGTGCAAAATCTGAT
ATGCAGGGTTTCTGATATGTGACCCCCAAAAGGGTCACGACCCACAGGTT
AAGAACCTCTGGCATAGATGACCCTGGAGGATACTGAATCAAACAAGACA
GGGACAGAAACACCAAACCTGAGTGGCTTCGTTGAATATGAAGTATCCAA
TCCAGCTAACCCAAGAGCAGAGAGACAGAAAGGACATTGTCCAATGAAGG
GATGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_j18.b1 MSMg01no514_j18.b1 CHROMAT_FILE:
MSMg01no514_j18.b1 PHD_FILE: MSMg01no514_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:34 2005
         (611 letters)



>mm_chr7_137154214_137155224
          Length = 1011

 Score =  928 bits (480), Expect = 0.0
 Identities = 519/532 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgcaaatcctgttcaaggcagtactcggcaacattttctttctcaagtgaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gaattcttgcaaatcctgttcaaggcagtactcggcaacattttctttctcaagtgaata 473

                                                                       
Query: 65  aatcaaatcagcttgcggtaaatattgtgacggtatggaaacgactgtgccaatgttttt 124
           |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct: 472 aatcaaatcagcttgccgtaaatattgtgatggtacggaaacgactgtgccaatgctttt 413

                                                                       
Query: 125 tgttaattgaaatgtattatatttatttatttgtatgcgtggtggctggggaatttatgc 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgttaattgaaatgtattatgtttatttatttgtatgcgtggtggctggggaatttatgc 353

                                                                       
Query: 185 acacacgtgagtgtgctcatgccatgcatgtatgtggaattgactcttctcttccacctc 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 352 acacacgtgagtgtgctcatgccatgcatgtatgtgggattgactcttctcttccacctc 293

                                                                       
Query: 245 gtagagccggaggatctaactttaccatctggcttactggcagttgcctttatccgctaa 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 292 atagagccggaggatctaactttaccatctggcttactggcagttgcctttatccactaa 233

                                                                       
Query: 305 gatgcctcactgccctccagaacttccttcttttatttttgagacaaggttcttatgtac 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gatgccttactgccctccagaacttccttcttttatttttgagacaaggttcttatgtac 173

                                                                       
Query: 365 cctagactggtctgaacttgctacctagctgaagctggccttaaacacctgatcttctta 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cctagactggcctgaacttgctacctagctgaagctggccttaaacacctgatcttctta 113

                                                                       
Query: 425 cctctatcatcccaggacctgaattctagtgtatcccagtgtgcctggctatgaaccaaa 484
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 112 cctctatcatctcaggacctggattctagtgtatcccagtgtgcctggctatgaaccaaa 53

                                                               
Query: 485 cttctgtccccaaggatttgctttctggtattctgggaactgagagtaaaga 536
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52  cttctgtccccaaggatttgctttctggtattctgggaactaagagtaaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)