BAC Information

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BAC

Clone NameMSMg01-514K16
Chromosome7 (Build37)
Map Location 114,197,849 - 114,198,497
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713
Downstream geneOlfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514K16.T7 (MSMg01no514_k16.b1)MSMg01-514K16.TJ (MSMg01no514_k16.g1)
ACCAG587096AG587097
length754757
length of high quality
(start - end)		716 (39 - 754)635 (69 - 703)
definitionCHROMAT_FILE: MSMg01no514_k16.b1 PHD_FILE: MSMg01no514_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:39 2005CHROMAT_FILE: MSMg01no514_k16.g1 PHD_FILE: MSMg01no514_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
AGAGGGGGACCAGAAAGGGGGCAACATTTGGGAATATAAATAAACAATTT
AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAGAACCAGACT
TTAGAAAATGGAAACTGAAGCTCAGAGAGTTTAACAAAACTAGTGAGCAT
CACAAGCAGAGAGACCAGAGCTGGGGTTAAATTTAAGTCACTCCGCTTCA
GACTCTCAATATGTTACTATGCATGGTGATGATGCTTTCCTTTACTAGTG
TTTGGTCTTTCTTGAGGTTTATCCTGCTGGTATTGGAACTTCATTATGGC
CTCGAAGGACAATAGATTCAAGAAAGGGCAGGTCCCATGGGGAATAAAAG
AAAATCTACTAACACCTGGAAAATAAAGGTTCTCTATCTTCATCTGACTC
CAAGGACAAGAGAGACACAGCTGAAGACAACTAACGGTTTTCTGTTATCT
GCTTCAGCTTCCTCTGTTCCTGTCAAGTTCAGTGCAGATGCATCTCTTAG
CAGTTTCTTCAGTCTGCTTCAGTAAGGCCAGTGTGTTTCACTTAACATTA
CTAAGTGTAAAGAAAGGAGTATTGGTAAATAGTTAGGAAGGAAGACAAAT
GGAATGTCTATTACTGTTTCCTCACTGATTTTATGATTCTGACCAACAAA
TATGCAGAGATTTTAAAGGACTCCCCACTCTTCTTAAATAAAACCTCTCT
CAAA

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCTCACTCCTACTCTTAGGATCCCCCAACAA
GTCCTTTCCTCATATCTAAGGCTTTTTGTTTTGCTTGTGATTGTGTTGGT
TAACTAGATATGGCTTTCATAGATTGATGTATTTTAATTCTTGGTCATAG
GAAGTGGCCCCATTAGGAGGTATGGCCTTGTTGAAGTAGATGTGGCCTTG
TTGGAGTAGATTTGGCCTTGTTAGAGGATTGTGCTACTGTGGAGGTAGGG
CTTTGATGTCTTAAATGCTTAAGCTATGCCCAGTGAAACACATCCAGTCT
TCTTCTGCTGCCTCTGGATCAAGATGTAGAACTATTGGCTCCATCTCCAG
TGCCATGTTTCCTACCATAATGACAATGGAATAAGCCTCTGAAAAAGTAA
GCCAACCTCAAAGAAATGTTTTTCTTTTATAATATCTGCAGATGCCAGGC
ATGGGGGAGTGGGAGGGAATCTCTGCGAACTCCAGGAGTACACAGGATGA
GGGCATCAGTGGGGATGATCTTAGCCAAGATGCTTAACAATTGGGATATG
AAACCTGAAGAGGCTACCTCCTGTAGACAGACAGGACCCCCAGCGGAAGG
ATAAGGACACTAATCCACCCATAAAATATTGAACTCAAAATTTGTCCTGT
CTAATAGAAATGCAGGAGCAAAACTGGAATAGACACTGAAGGACTGGNCA
ACCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_k16.b1 MSMg01no514_k16.b1 CHROMAT_FILE:
MSMg01no514_k16.b1 PHD_FILE: MSMg01no514_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:39 2005
         (716 letters)



>mm_chr7_114197396_114198511
          Length = 1116

 Score = 1210 bits (626), Expect = 0.0
 Identities = 644/650 (99%), Gaps = 3/650 (0%)
 Strand = Plus / Minus

                                                                        
Query: 68   ataaataaataaata-aa-taaataaataaataaatagaaccagactttagaaaatggaa 125
            ||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 ataaataaataaa-acaatttaataaataaataaatagaaccagactttagaaaatggaa 1044

                                                                        
Query: 126  actgaagctcagagagtttaacaaaactagtgagcatcacaagcagagagaccagagctg 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 actgaagctcagagagtttaacaaaactagtgagcatcacaagcagagagaccagagctg 984

                                                                        
Query: 186  gggttaaatttaagtcactccgcttcagactctcaatatgttactatgcatggtgatgat 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  gggttaaatttaagtcactccgcttcagactctcaatatgttactatgcatggtgatgat 924

                                                                        
Query: 246  gctttcctttactagtgtttggtctttcttgaggtttatcctgctggtattggaacttca 305
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  gcttccctttactagtgtttggtctttcttgaggtttatcctgctggtattggaacttca 864

                                                                        
Query: 306  ttatggcctcgaaggacaatagattcaagaaagggcaggtcccatggggaataaaagaaa 365
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  tcatggcctcgaaggacaatagattcaagaaagggcaggtcccatggggaataaaagaaa 804

                                                                        
Query: 366  atctactaacacctggaaaataaaggttctctatcttcatctgactccaaggacaagaga 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  atctactaacacctggaaaataaaggttctctatcttcatctgactccaaggacaagaga 744

                                                                        
Query: 426  gacacagctgaagacaactaacggttttctgttatctgcttcagcttcctctgttcctgt 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  gacacagctgaagacaactaacggttttctgttatctgcttcagcttcctctgttcctgt 684

                                                                        
Query: 486  caagttcagtgcagatgcatctcttagcagtttcttcagtctgcttcagtaaggccagtg 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683  caagttcagtgcagatgcatctcttagcagtttcttcagtctgcttcagtaaggccagtg 624

                                                                        
Query: 546  tgtttcacttaacattactaagtgtaaagaaaggagtattggtaaatagttaggaaggaa 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  tgtttcacttaacattactaagtgtaaagaaaggagtattggtaaatagttaggaaggaa 564

                                                                        
Query: 606  gacaaatggaatgtctattactgtttcctcactgattttatgattctgaccaacaaatat 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  gacaaatggaatgtctattactgtttcctcactgattttatgattctgaccaacaaatat 504

                                                              
Query: 666  gcagagattttaaaggactccccactcttcttaaataaaacctctctcaa 715
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503  gcagagattttaaaggactccccactcttcttaaataaaacctctctcaa 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space:   780836
Effective search space used:   780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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