BAC Information

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BAC

Clone NameMSMg01-515C01
Chromosome7 (Build37)
Map Location 83,741,782 - 83,742,452
singlet/doubletsinglet
Overlap geneEG244071
Upstream geneAkap13, Klhl25, LOC100042210, LOC434200
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515C01.T7 (MSMg01no515_c01.b1)MSMg01-515C01.TJ (MSMg01no515_c01.g1)
ACCAG587443AG587444
length777781
length of high quality
(start - end)
671 (46 - 716)671 (74 - 744)
definitionCHROMAT_FILE: MSMg01no515_c01.b1 PHD_FILE: MSMg01no515_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:18 2005CHROMAT_FILE: MSMg01no515_c01.g1 PHD_FILE: MSMg01no515_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGATCCGCGGA
ATTCCCACAGCTGATTCCAACTTCAGCAAAGTGACTAGATATAAAATTAA
CTCTTAAAAAAATCATTAGCTTTCCTCTACTCAAGGATAAATTGGTCTGA
GAAAAACATTAGGGAAACAACAACCTTCAGTCACAAATAATATAAAATAT
CTTGGCGTTACTCTAAGGAAGTGAAAGATCTGTATGACAAGAACTTCAAG
TCTCTGAAGAAAGAAATCAAAGAAGACCAAAGAAGATGGGATGATCTCCC
ATGCTCATGGATAGGCAAGATTAATATAGTAAAAATGGCCATCTTGCCAA
AAGCAATGTACAGATTCGATGGAATGCCCATCAAAATTCCAACTCAATTC
TTCATAGAGTTAGAAAGAACAATTCCCAAATTCATCCGGAATAACAAAAA
CCCCAGGATTGTGAAAATCATTCTCAACAATAATAATAAAAAATGAACAA
ACAAAAAAATAACTTCTGGGGGGTATCACCACCCCTGACTTCAAGCTGTA
ATACAGAGCAATAGTGATAAAATCTTCATGGTATTGGTACAGAGTCAGGC
AGGTAGCTCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACC
TATGGTCACTTGATCTTTGACAGCATTTTCAACAAATGATGTTGTACAAC
TGGCAGTCAGCATGTAGAAGAATGCAAATTGATCCATACTTATATCCCTG
TACAAAGCTAAAGTCCAAGTGGATCAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAGAAAGCACAGTTAGAAAGATACC
TTAGTTAATAAACTGACATCTAGGTTTATCATCTATTTCTTTAAATATAA
TCATAGGACCACATCTATTGAAACTTTCCACAAATCATATATTCTATAAT
ATAACTTAAAGACTAACAAAATCTTCCAGGGAAAATAATGCAATCATTAT
TATCTTTCAAACAGCAATCTCAGAGCATTGATGGTCAACAGGTAATAAAC
AATTTTCCATTGTAAACAACTTACATATGAGTAGTATTGCTATGTTCGTA
ATGAGTTTATTTGGCCATTTCATGAATCTAAATTTTTAAGTTCAGATAGT
AGAATCAAATATTTTGTAAATTGTGTATTTGATGCCTATTTGATTGAGTT
CCTTCTATTATAAACTTCATAGGTTTATGTCCACACTAAAAATGGACAGT
GCTGCTGGCTGTTCATACCCTTGTAAATATGATGCATTGTGAATATTAAT
ATTTCCATTGGTATGATAGGATACATATGACTTTAATCTTTTATAGTTGT
GACTTCTAATTCGTAGAATTCCCAGAAAGCTGGGAATCTCCCCCATTTAT
TCATAATTTCAATATTAAAATGTTAGTCTAGATTCTGGTTCTACCCTGTT
TGTGTTCCTCTGTGTTTGGGGGCTCTGAGAGGAGGGGAGTGGAGAATATC
TTATCTCTTTGCTTTGTCTTGCTTACGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_c01.g1 MSMg01no515_c01.g1 CHROMAT_FILE:
MSMg01no515_c01.g1 PHD_FILE: MSMg01no515_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:18 2005
         (671 letters)



>mm_chr7_83741582_83742652
          Length = 1071

 Score = 1251 bits (647), Expect = 0.0
 Identities = 665/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagaaagcacagttagaaagataccttagttaataaactgacatctaggtttatcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaaagcacagttagaaagataccttagttaataaactgacatctaggtttatcatc 260

                                                                       
Query: 61  tatttctttaaatataatcataggaccacatctattgaaactttccacaaatcatatatt 120
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 261 tatttctttaaatataatcataggatcacatctattgatactttccacaaatcatatatt 320

                                                                       
Query: 121 ctataatataacttaaagactaacaaaatcttccagggaaaataatgcaatcattattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctataatataacttaaagactaacaaaatcttccagggaaaataatgcaatcattattat 380

                                                                       
Query: 181 ctttcaaacagcaatctcagagcattgatggtcaacaggtaataaacaattttccattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcaaacagcaatctcagagcattgatggtcaacaggtaataaacaattttccattgt 440

                                                                       
Query: 241 aaacaacttacatatgagtagtattgctatgttcgtaatgagtttatttggccatttcat 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aaacaacttacatatgagtagtattgctatgttcataatgagtttatttggccatttcat 500

                                                                       
Query: 301 gaatctaaatttttaagttcagatagtagaatcaaatattttgtaaattgtgtatttgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatctaaatttttaagttcagatagtagaatcaaatattttgtaaattgtgtatttgat 560

                                                                       
Query: 361 gcctatttgattgagttccttctattataaacttcataggtttatgtccacactaaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctatttgattgagttccttctattataaacttcataggtttatgtccacactaaaaat 620

                                                                       
Query: 421 ggacagtgctgctggctgttcatacccttgtaaatatgatgcattgtgaatattaatatt 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 ggacagtgctgctggctgttcatacccttgtaaatatgatacattgtgaatattaatatt 680

                                                                       
Query: 481 tccattggtatgataggatacatatgactttaatcttttatagttgtgacttctaattcg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 tccattggtatgataggatacatatgactttaatcttttatagttgtgacttctaatttg 740

                                                                       
Query: 541 tagaattcccagaaagctgggaatctcccccatttattcataatttcaatattaaaatgt 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 tagaattcccagaaagctgggaatctctcccatttattcataatttcaatattaaaatgt 800

                                                                       
Query: 601 tagtctagattctggttctaccctgtttgtgttcctctgtgtttgggggctctgagagga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagtctagattctggttctaccctgtttgtgttcctctgtgtttgggggctctgagagga 860

                      
Query: 661 ggggagtggag 671
           |||||||||||
Sbjct: 861 ggggagtggag 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)