Query= MSMg01no515_i23.b1 MSMg01no515_i23.b1 CHROMAT_FILE:
MSMg01no515_i23.b1 PHD_FILE: MSMg01no515_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:55 2005
(708 letters)
>mm_chr8_90815238_90816345
Length = 1108
Score = 1294 bits (669), Expect = 0.0
Identities = 696/705 (98%)
Strand = Plus / Minus
Query: 4 ggaattccttttagtgttcagccctgggtgggggtgagggacagggatggacacaggaga 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ggaattccttttagtggccagccctgggtgggggtgagggacagggatggacacaggaga 849
Query: 64 gggcataagaaagatgtcgggaggttgcccacagagacaggcagacacatggagctgccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gggcataagaaagatgtcgggaggttgcccacagagacaggcagacacatggagctgccc 789
Query: 124 tcttggtggagcctaggactcctgaaagggctcccctcagaggaatgccaaccaggttaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tcttggtggagcctaggactcctgaaagggctcccctcagaggaatgccaaccaggttaa 729
Query: 184 gtgctgtagtgtgtgcggcatggaggctgcatggatgggcagagagactgcacagacaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtgctgtagtgtgtgcggcatggaggctgcatggatgggcagagagactgcacagacaag 669
Query: 244 cagcaggggagtgccaagccagtgctgtgagcaagtcagagggctggctaagagtggaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cagcaggggagtgccaagccagtgctgtgagcaagtcagagggctggctaagagtggaca 609
Query: 304 cgaagacagggagacctgggaggctgacagggatcacatctgacctctgcagaggagaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cgaagacagggagacctgggaggctgacagggatcacatctgacctctgcagaggagaaa 549
Query: 364 ctaaccatacactgttagaagtctcaatactgtgaacctcctactcggtccaggctggcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctaaccatacactgttagaagtctcaatactgtgaacctcctactcggtccaggctggcc 489
Query: 424 accccatcctgtgctgagcacagggcctgggccaaaccaacaccccgggccacactacat 483
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 488 accccatcctgtgctgagcacagggcctgggccaaaccaacacccggggccacactacat 429
Query: 484 acatcctgcaaagacagcagatgacagcaagaaagctctgttctaagaatccctgaagaa 543
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 428 acatcctgcaaagacagcagatgacagcaagaaagctctgttctaagtatccctgaagaa 369
Query: 544 ggccagctggggaaatagagcagcgaccaggctgctgcccattcaacccaccaccatgtc 603
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 368 ggccagctagggaaatagaacagtgaccaggctgctgcccattcaacccaccagcatgtc 309
Query: 604 cacctagcagaggactcgagggacaacagacccatcagccagggtgggtctgaaccaaga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cacctagcagaggactcgagggacaacagacccatcagccagggtgggtctgaaccaaga 249
Query: 664 ctggtgaaggccagccacgacgcgatgctgaaaccctaagcagca 708
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 248 ctggtgaaggccagccacgacgcgatgctgaaaccctgagcagca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_i23.g1 MSMg01no515_i23.g1 CHROMAT_FILE:
MSMg01no515_i23.g1 PHD_FILE: MSMg01no515_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:55 2005
(597 letters)
>mm_chr7_119392216_119393212
Length = 997
Score = 1025 bits (530), Expect = 0.0
Identities = 581/598 (97%), Gaps = 2/598 (0%)
Strand = Plus / Minus
Query: 1 actgcttgctgccaaccttcctccagggacatagtctgggtgctatatgtcttcaggaaa 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 actgcttgctgccaaccatcctccagggacatagtctgggtgctatatgtcttcaggaaa 738
Query: 61 agtgtttgtgtgttgtgggaggtatctcaggctggcacacactgctcattctggacctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agtgtttgtgtgttgtgggaggtatctcaggctggcacacactgctcattctggacctct 678
Query: 121 ttgcctggatctgagtctaatactaggaaatccgaactctaaagcagctttcctttgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttgcctggatctgagtctaatactaggaaatccgaactctaaagcagctttcctttgagt 618
Query: 181 ccaatccacctctcatactgtccccctgtgtgtcctcagtgcccaccaagccagtctctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccaatccacctctcatactgtccccctgtgtgtcctcagtgcccaccaagccagtctctg 558
Query: 241 aatgcatcaacatgtcaccagtggtcaccctagcctggactggatggcccctgctgttct 300
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 557 aatgaatcaacatgtcaccagtggtcaccctagcctggactagatggcccctgctgttct 498
Query: 301 tccctgatccttacactcccccctcctccaacaaaacctagttcttgtgagtcctgaatg 360
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 497 tcactgatccttacactccccccccc-ccaacaaaacctagttcttgtgagtcctgaatg 439
Query: 361 ttcctggagaggctaagccatttccc-tgtgtcccttcagctcaggacccaggatgagtg 419
|||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||
Sbjct: 438 ttcctggagaggctaagccatttcccctgtgtcccttcagctcagggccctgaatgagtg 379
Query: 420 ccaacaaaggcaggcataggtcttaagatgttctcaaagtggagttcacaaaagagaggc 479
|||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 378 ccaacaaaggcaggcacaggtcttaagatgttttcaaagtggaattcacaaaggagaggc 319
Query: 480 aaaggaggagaaagcagggaacagaaaaaagggccttagtgcttgtccatggcccatggt 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 318 aaaggaggagaaagcagggaacagaaaaaagggccttagtgcttgtctatggcccatggt 259
Query: 540 ccaattctctactctggttggttttataacctgcagaaagtcttttcagactgggctt 597
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccaactctctactctggttcgttttataacctgcagaaagtcttttcagactgggctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
