BAC Information

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BAC

Clone NameMSMg01-516C12
Chromosome7 (Build37)
Map Location 12,472,938 - 12,473,598
singlet/doubletsinglet
Overlap genenone
Upstream geneZscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6
Downstream geneLOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516C12.T7 (MSMg01no516_c12.b1)MSMg01-516C12.TJ (MSMg01no516_c12.g1)
ACCAG588221AG588222
length756754
length of high quality
(start - end)
614 (54 - 667)661 (79 - 739)
definitionCHROMAT_FILE: MSMg01no516_c12.b1 PHD_FILE: MSMg01no516_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:46 2005CHROMAT_FILE: MSMg01no516_c12.g1 PHD_FILE: MSMg01no516_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTTCCTTCCCAAACATTCTGATAATATTTTAAAATT
TTACTGTTGTGTATGTTTGTGTGCATAATATATGTGTGTACAAAACATGC
ATGTCTAGTACCCACATTGGCGAGAAGAACATGTTGGATGCTCTGAAATT
TACTTATAGGTGGTGGATAACCACTGTGTGTCTGCTGGGAACTAAACTCG
GATCCTTTTCTTTCTTTTTTTTATTTAAACAGTTATTTATTAGATATTTT
CTTAATTTACAATTAAAATGCTATCCCAAAAACTCCCCTATTCCCCCCTC
CCCCCACTGAACTGCTCCCCAACCCACCCACTCCTGCTTCCTGGCCCTGG
CATTCCCCTGTACTGGGGCATAGAATCTTTGCAAGACCAAGGGCATCTCC
TCCCAGTGATGGCCAATTAGGCCATCTTCTGCTACATATGCAGCTAGAGA
CACAAGCTCACGGGGTACTGGTTAGTTTATATTGCTGCTCCTCCTATAGG
GTTACAGACACCTTGGAGTCCTTGGGTACTCTCTCTAGCTCCTCCATTGG
GGGCCCTGTGTTCCATCCAATGGATGACTGTGAGCATTGACTTCTGTATT
TGCCAGGCACTGGCATAGCCTACCAAGAGACAGCTATATAAGGGTCCTGT
CAGCAAAATCTTGCTGGCATATGCAATAGTATCTCTATTTGGTGGCTGAT
TATGGA
NNNNGCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGAAAAAGGACAGAAAGAA
TGATACTAGCATTAGAATGTTTCCTCCTGTGCTTCCAGTTGTTTTTTCTT
GTCAACATGAAGATGATACAGCTATTAGCTTCTATACTGAAGGTACTGGG
TTACTAGTGTATATATACTCTCAGGAACTGCAGCCTAGACCAATGTCTTC
TTTGCACAAAAAGAATCTTTTATTATAAATTAAATGTGATGGTAGTTTCT
CAGGAAAATTAGGAAACCAGACATATTTTCTTGAAGAGCTAAATGTATCT
GAAGAATATAATTTTACATATTTAAAGTATTTTGATGAAGCTTCTAGAAA
ATGGGAGTTAAAAATATGGCATAGAGGAGCTGGAGTCATGGAGATTGTCA
AGTGAGTAAAACGAGCCAAATGTGACATGGGCTGTGATGATAGGTTTTAA
ACATGTTTTATTTTAAAGTCCATATTAATTGTTCATAGGAAGATATTGCA
TAGTGAACTTGTGTCATATTCATTCTTCATTATTACATCTGTTTCTACCT
TCCTGCTCTCTGATTCTTTTCTTCTTCTCAGTAGCTCATATTTTTACAAC
CTTTGATGACACTTGAAGAACTGTAGTGTTCCCATATGAGAAGCAATAGA
CAATAGGTTGGAGCTATAAATATCACCTTGATCTTTTAGATCCCATTGAA
TTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_c12.g1 MSMg01no516_c12.g1 CHROMAT_FILE:
MSMg01no516_c12.g1 PHD_FILE: MSMg01no516_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:46 2005
         (661 letters)



>mm_chr7_12472738_12473798
          Length = 1061

 Score = 1193 bits (617), Expect = 0.0
 Identities = 650/661 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgaaaaaggacagaaagaatgatactagcattagaatgtttcctcctgtgcttccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgaaaaaggacagaaagaatgatactagcattagaatgtttcctcctgtgcttccag 260

                                                                       
Query: 61  ttgttttttcttgtcaacatgaagatgatacagctattagcttctatactgaaggtactg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttttttcttgccaacatgaagatgatacagctattagcttctatactgaaggtactg 320

                                                                       
Query: 121 ggttactagtgtatatatactctcaggaactgcagcctagaccaatgtcttctttgcaca 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttactagtgtatatatactcgcaggaactgcagcctagaccaatgtcttctttgcaca 380

                                                                       
Query: 181 aaaagaatcttttattataaattaaatgtgatggtagtttctcaggaaaattaggaaacc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aaaagaattttttattataaattaaatgtgatggtagtttctcaggaaaattaggaatcc 440

                                                                       
Query: 241 agacatattttcttgaagagctaaatgtatctgaagaatataattttacatatttaaagt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacgtattttcttgaagagctaaatgtatctgaagaatataattttacatatttaaagt 500

                                                                       
Query: 301 attttgatgaagcttctagaaaatgggagttaaaaatatggcatagaggagctggagtca 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 attttgatgaagcttctagaaaatgggagttaaaaatatggcatggaggagctggagtca 560

                                                                       
Query: 361 tggagattgtcaagtgagtaaaacgagccaaatgtgacatgggctgtgatgataggtttt 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggagattgtcaagtgagtaaaatgagccaaatgtgacatgggctgtgatgataggtttt 620

                                                                       
Query: 421 aaacatgttttattttaaagtccatattaattgttcataggaagatattgcatagtgaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacatgttttattttaaagtccatattaattgttcataggaagatattgcatagtgaac 680

                                                                       
Query: 481 ttgtgtcatattcattcttcattattacatctgtttctaccttcctgctctctgattctt 540
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 681 ttgtgtcatattcattcttcattattacatctgtttctacctttctgctctctggttctt 740

                                                                       
Query: 541 ttcttcttctcagtagctcatatttttacaacctttgatgacacttgaagaactgtagtg 600
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcttcatctcaggagctcatatttttacaacctttgatgacacttgaagaactgtagtg 800

                                                                       
Query: 601 ttcccatatgagaagcaatagacaataggttggagctataaatatcaccttgatctttta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcccatatgagaagcaatagacaataggttggagctataaatatcaccttgatctttta 860

            
Query: 661 g 661
           |
Sbjct: 861 g 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)