BAC Information

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BAC

Clone NameMSMg01-516D13
Chromosome7 (Build37)
Map Location 4,595,645 - 4,796,064
singlet/doubletdoublet
Overlap geneSaps1, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik
Upstream geneCnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, EG628211
Downstream geneIsoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516D13.T7 (MSMg01no516_d13.b1)MSMg01-516D13.TJ (MSMg01no516_d13.g1)
ACCAG588271AG588272
length743745
length of high quality
(start - end)		689 (55 - 743)657 (82 - 738)
definitionCHROMAT_FILE: MSMg01no516_d13.b1 PHD_FILE: MSMg01no516_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:51 2005CHROMAT_FILE: MSMg01no516_d13.g1 PHD_FILE: MSMg01no516_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,595,645 - 4,596,330)(4,795,408 - 4,796,064)
sequence
NNNAAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
GGNGGAATTCCAGGACATTCCGGGCTACATTGAGAAACCCTGTCTCAAAA
ACAAAAAACCTACTGGGGCTCCCACCACCACAAAATGACATCTGACTTGA
ACTTAGTCCTAAAACTCAAACATTTCCTGTTCCCCTCCCAACACTAACTC
CTATCTCCTCTAATGCCATGCCCAGTCCCACATGCTGCTCCAGCTCAGGC
CTTCTCTCCTCAGCATCCTAGCCCTGACATTATTTTTCTAAGCCTCCAAC
CTTTGCTCCTGTCGTCAAACACCCTTGGGTACTTGACATTCCAGAAGCTT
CACTCCCCAGGATGTCATCTAAGGCCCTAGGAGACTACAGCTATTCCAAG
TCTAGCCCAAAACCTTGAGACCTGTGCCAAGGGACCCCAACATCTAGAAA
ACAGACTCCTTAATCAAGGCAGAGACGCCCAGAGCCAGCAAGGCTGCTTG
CTGTCAGCTCTCTATGCCGAGTCTAGATCACAGTCCATTAGGTGCAGGTT
AACGAGGGCTGACGGGTAGAAAGGGAAGAGCAGAGAAGACATCCGGTGGG
ACAAGCTGGCAAATGACAGCATCACTCTGTCCTCCACAAGTGCTATCAGA
GGCAGCAAGACCAAATAGGCCGTGACTCTACAGCCAACACTGCTTTCCTG
AGTCCCCACTGTAACAGGAAGACTGAGGAGCAGCCAGCATTAT

TTGGTACCAAGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCCCCTTGGAGATCA
GAGTGTTCAAACTCTACAGACGCCCCTCCGCCTCCACCGCGTCAAACCCT
CACCCGAGATTCGCAGACTCCATCCCCAGCCTGGGGGCCTTTGAAGGCAT
CCCGTGTCCACCAGAGATGCAAGGACCAGTCCAACCCCATTGACAATCAA
ACTCACCCACCGCCGCCGCAGATCCTAGCAGCCCAGCCCCCTCCCACAAG
TTACCTAGCCCAGTACACCCTCCCCGGGGACCTAGGAGTTCCATCCATCC
TCCGGAGCCCCTTGGGACACGGGCGTCGGAGCCCCGGCCCCCGCGTTCCG
GTTCCAGGTGTCCCCTCCGCACACCCAGCCCGAAGCCTGCGTCTCGAGGC
CGCGCTCGCGTCGCCATGGCAACGGGAGTCTATTTTGCGCTGGGAACACA
CAGCTCCCTCCGCAGCGCCCCCCACCCACTCTGCTCAAGAGTGAGGGGCT
CAAAGGGCGGGGAACAGTGCAGTGATGAGAATGAGACACTTAGAAGGGAC
AGAATCCCGGGACAGACAAGCAGAGATTGAGAGAGCCCCTGACAGAGGAA
CTGGGTGTGGAAATTACAAGGAGGCTACAGATCCAGGCGGGGGAGGTTGG
GGATGGAGGGCCCAGACAGAGATCCGGACAGAGCCCTAGACAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_d13.b1 MSMg01no516_d13.b1 CHROMAT_FILE:
MSMg01no516_d13.b1 PHD_FILE: MSMg01no516_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:51 2005
         (689 letters)



>mm_chr7_4595442_4596530
          Length = 1089

 Score = 1218 bits (630), Expect = 0.0
 Identities = 672/686 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttccaggacattccgggctacattgagaaaccctgtctcaaaaacaaaaaacctactggg 63
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttccaggacagtcagggctacattgagaaaccctgtctcaaaaacaaaaaacctactggg 263

                                                                       
Query: 64  gctcccaccaccacaaaatgacatctgacttgaacttagtcctaaaactcaaacatttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctcccaccaccacaaaatgacatctgacttgaacttagtcctaaaactcaaacatttcc 323

                                                                       
Query: 124 tgttcccctcccaacactaactcctatctcctctaatgccatgcccagtcccacatgctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttcccctcccaacactaactcctatctcctctaatgccatgcccagtcccacatgctg 383

                                                                       
Query: 184 ctccagctcaggccttctctcctcagcatcctagccctgacattatttttctaagcctcc 243
           |||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 384 ctccagctcaggccttctgtcctcagcatcctagccccgacattatctttctcagcctcc 443

                                                                       
Query: 244 aacctttgctcctgtcgtcaaacacccttgggtacttgacattccagaagcttcactccc 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 aacctttgctcctgtcctcaaacacccttgggtacttgacattccagaagcttcactacc 503

                                                                       
Query: 304 caggatgtcatctaaggccctaggagactacagctattccaagtctagcccaaaaccttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caggatgtcatctaaggccctaggagactacagctattccaagtctagcccaaaaccttg 563

                                                                       
Query: 364 agacctgtgccaagggaccccaacatctagaaaacagactccttaatcaaggcagagacg 423
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 aggcctgtgccaagggaccccaacatctagaaaacagactccttaatcagggcagagacg 623

                                                                       
Query: 424 cccagagccagcaaggctgcttgctgtcagctctctatgccgagtctagatcacagtcca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccagagccagcaaggctgcttgctgtcagctctctatgccgagtctagatcacagtcca 683

                                                                       
Query: 484 ttaggtgcaggttaacgagggctgacgggtagaaagggaagagcagagaagacatccggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 ttaggtgcaggttaacgagggctgacgggtagaaagggaagagcagagaagacatcccgt 743

                                                                       
Query: 544 gggacaagctggcaaatgacagcatcactctgtcctccacaagtgctatcagaggcagca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gggacaagctggcaaatgacagcatcactctgtcctccacaagtgctatcagaggcagca 803

                                                                       
Query: 604 agaccaaataggccgtgactctacagccaacactgctttcctgagtccccactgtaacag 663
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct: 804 agaccaaataggccgtgactctacagccaacactgctatactgagtccccactataacag 863

                                     
Query: 664 gaagactgaggagcagccagcattat 689
           ||||||||||||||||||||||||||
Sbjct: 864 gaagactgaggagcagccagcattat 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_d13.g1 MSMg01no516_d13.g1 CHROMAT_FILE:
MSMg01no516_d13.g1 PHD_FILE: MSMg01no516_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:52 2005
         (657 letters)



>mm_chr7_4795208_4796264
          Length = 1057

 Score = 1270 bits (657), Expect = 0.0
 Identities = 657/657 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagccccttggagatcagagtgttcaaactctacagacgcccctccgcctccaccgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tgcagccccttggagatcagagtgttcaaactctacagacgcccctccgcctccaccgcg 798

                                                                       
Query: 61  tcaaaccctcacccgagattcgcagactccatccccagcctgggggcctttgaaggcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tcaaaccctcacccgagattcgcagactccatccccagcctgggggcctttgaaggcatc 738

                                                                       
Query: 121 ccgtgtccaccagagatgcaaggaccagtccaaccccattgacaatcaaactcacccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccgtgtccaccagagatgcaaggaccagtccaaccccattgacaatcaaactcacccacc 678

                                                                       
Query: 181 gccgccgcagatcctagcagcccagccccctcccacaagttacctagcccagtacaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gccgccgcagatcctagcagcccagccccctcccacaagttacctagcccagtacaccct 618

                                                                       
Query: 241 ccccggggacctaggagttccatccatcctccggagccccttgggacacgggcgtcggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccccggggacctaggagttccatccatcctccggagccccttgggacacgggcgtcggag 558

                                                                       
Query: 301 ccccggcccccgcgttccggttccaggtgtcccctccgcacacccagcccgaagcctgcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccccggcccccgcgttccggttccaggtgtcccctccgcacacccagcccgaagcctgcg 498

                                                                       
Query: 361 tctcgaggccgcgctcgcgtcgccatggcaacgggagtctattttgcgctgggaacacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctcgaggccgcgctcgcgtcgccatggcaacgggagtctattttgcgctgggaacacac 438

                                                                       
Query: 421 agctccctccgcagcgccccccacccactctgctcaagagtgaggggctcaaagggcggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agctccctccgcagcgccccccacccactctgctcaagagtgaggggctcaaagggcggg 378

                                                                       
Query: 481 gaacagtgcagtgatgagaatgagacacttagaagggacagaatcccgggacagacaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaacagtgcagtgatgagaatgagacacttagaagggacagaatcccgggacagacaagc 318

                                                                       
Query: 541 agagattgagagagcccctgacagaggaactgggtgtggaaattacaaggaggctacaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agagattgagagagcccctgacagaggaactgggtgtggaaattacaaggaggctacaga 258

                                                                    
Query: 601 tccaggcgggggaggttggggatggagggcccagacagagatccggacagagcccta 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tccaggcgggggaggttggggatggagggcccagacagagatccggacagagcccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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