BAC Information

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BAC

Clone NameMSMg01-516F02
Chromosome7 (Build37)
Map Location 17,465,867 - 17,466,394
singlet/doubletsinglet
Overlap geneDact3
Upstream geneCrxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2
Downstream geneGng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516F02.T7 (MSMg01no516_f02.b1)MSMg01-516F02.TJ (MSMg01no516_f02.g1)
ACCAG588344AG588345
length756755
length of high quality
(start - end)		691 (52 - 742)625 (82 - 706)
definitionCHROMAT_FILE: MSMg01no516_f02.b1 PHD_FILE: MSMg01no516_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:59 2005CHROMAT_FILE: MSMg01no516_f02.g1 PHD_FILE: MSMg01no516_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTATGTAGAAGAGGCTGGATTCGAACCCAGAGAAATGT
GCCTGCGTCTGCCTTCCAAATCCTGGAATTAAAGGCATGCACCACCACCA
GGCTCCTTTTGGTTGTTGACCTGAGGACTCATGTAGCTCAAACTTCATAA
GTAGCAAAGGATGGCTTTGAACTCCCAATCCTTCCACATGCAAGGATTAA
AAGCACTAACCACCACTCCTATTTTTTCAGGGAGATTGCGAGCGTGCGTG
CGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTATCCATAAACA
AAATGTTAAACCAGGAGTTTCAGTGAATGGCTGTAATCCTGACATTTGGG
AGGCTGAAGCAGGAGGATCAATGCATGTTAAAGGCTAGTCTAGTCACATA
GTATCAACATGGCAAGATCCCATGCCAAAAAGAATCGGTCTCTCTCTCTC
TCTCTCTCTCTCTCACACACACACACACACACACACAAAACCAATCAATC
AATCAATCAGTCAATCACATTTTAAGATGTTTCAAAACAAAATTTAAAAA
ATAAAAAAATTAAATTTTAAAAAATTAAAAAAAAATAAATTAAATTTAGG
TTCTGCATAGGAGAGGAAACACTCAGTGTTTGTCTCTCTAAATTTGGCTT
TCCTCTCTCTTCACAGTCTATTTATATCACATTTTCATAGTCAGTCATCC
CCTAAG

NNCCCCAATGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGTAAAGGTCGGGGTG
CGGGGTGCGGGAGCAGGCAGATCCAAGGGTGGTCTTGAGGCTGCCTCGTC
AGTTTTGACCCTCCTTTCGGGAGGTACTACACTTCCCTTTATCACCAATG
GGAAGTTCTTAAGGAAGTTCCCCCTTAGTGCTCCCTGCTGCTGCAGCAGA
CTGGCAACCTCATATAACAAACAAGCAGTGCAATTCAAACGCCTCACAAT
TCCTCCCTTCAGGAGGAGCCACACCCTTCATGCCTCCTGTAAGTCCCTCT
GTAAATCTAGCCTTCCTGGTGGCCTCAGCAGTGAGCACAGACCAAGGCAC
TCGGGACTGGGATGGGGGATGGAGCTAAGTTGGAAGAGTGACTGCCTAGC
AGGAAACTCTGGGTTTAGTCCCCAGTATTGTATAAAAGACCTGTAGTCCT
AGCACTGACCAGGGAGGTAGAGGCAGAGGATAAGGAGTTCAAAGCCATTC
TTGTCTACCTACTGAGTCTGAGGGCAGCCCGGTCCACAAGACCCTGTCTC
TACAATTTAAAAAAAATCTAGGATTTTATCTTATTTTGGAAGCCACAGAG
GCAGGGCCAGGGAATGTCTCACAGGGGACTCAGTGAGACCAGAGGTAGCG
GCTGCCAGGGGCAGACAGTTGACCCTCAGACAAAAGCGGCTTGTCTGGAA
GCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_f02.g1 MSMg01no516_f02.g1 CHROMAT_FILE:
MSMg01no516_f02.g1 PHD_FILE: MSMg01no516_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:59 2005
         (625 letters)



>mm_chr7_17465867_17466892
          Length = 1026

 Score =  975 bits (504), Expect = 0.0
 Identities = 522/528 (98%), Gaps = 1/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggtaaaggtcggggtgcg-gggtgcgggagcaggcagatccaagggtggtcttgagg 59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agtggtaaaggtcggggtgcgagggtgcgggagcaggcagatccaagggtggtcttgagg 469

                                                                       
Query: 60  ctgcctcgtcagttttgaccctcctttcgggaggtactacacttccctttatcaccaatg 119
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctgcctcatcagttttgaccctcttttcgggaggtactacacttccctttatcaccaatg 409

                                                                       
Query: 120 ggaagttcttaaggaagttcccccttagtgctccctgctgctgcagcagactggcaacct 179
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggaagttcttacggaagttcccccttagtgctccctgctgctgcagcagactggcaacct 349

                                                                       
Query: 180 catataacaaacaagcagtgcaattcaaacgcctcacaattcctcccttcaggaggagcc 239
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 348 catataacaaacaagcagtgcaattcaaacgcctcacaattcttcccttcaggaggagcc 289

                                                                       
Query: 240 acacccttcatgcctcctgtaagtccctctgtaaatctagccttcctggtggcctcagca 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acacccttcgtgcctcctgtaagtccctctgtaaatctagccttcctggtggcctcagca 229

                                                                       
Query: 300 gtgagcacagaccaaggcactcgggactgggatgggggatggagctaagttggaagagtg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gtgagcacagaccaaggcactcgggactgggatgggggatggagctaagttggaagagtg 169

                                                                       
Query: 360 actgcctagcaggaaactctgggtttagtccccagtattgtataaaagacctgtagtcct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 actgcctagcaggaaactctgggtttagtccccagtattgtataaaagacctgtagtcct 109

                                                                       
Query: 420 agcactgaccagggaggtagaggcagaggataaggagttcaaagccattcttgtctacct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 agcactgaccagggaggtagaggcagaggataaggagttcaaagccattcttgtctacct 49

                                                           
Query: 480 actgagtctgagggcagcccggtccacaagaccctgtctctacaattt 527
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  actgagtctgagggcagcccggtccacaagaccctgtctctacaattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space:   624840
Effective search space used:   624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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