BAC Information

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BAC

Clone NameMSMg01-516G04
Chromosome7 (Build37)
Map Location 47,352,181 - 47,513,222
singlet/doubletdoublet
Overlap geneEG628161
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneLOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516G04.T7 (MSMg01no516_g04.b1)MSMg01-516G04.TJ (MSMg01no516_g04.g1)
ACCAG588394AG588395
length749758
length of high quality
(start - end)		666 (51 - 716)666 (81 - 746)
definitionCHROMAT_FILE: MSMg01no516_g04.b1 PHD_FILE: MSMg01no516_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:05 2005CHROMAT_FILE: MSMg01no516_g04.g1 PHD_FILE: MSMg01no516_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,352,181 - 47,352,843)(47,512,638 - 47,513,222)
sequence
NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGCCATCACTGTCCAGAGAGCGGGACCTCTCTCCAGATG
CATTCTCAGCTGCAGCAATGTGGCTCATTGCCTCCAGCTCTGCATTGCTT
TGTATTCCAGTTAGGTTCTTGACAGGTGAGGTCTTATATATGTATATATA
TTTTTCCTTCTACGAAGAAAAAATATGTTTGACTTCTGGAAATATCTATA
GCTGAGAAAAAGTAAGCCCATTTGATATCAGCAGAGTTGTTTACTGTTAA
GTCAGGATGTGCCTTCATTCTCATTCAAAGCATACTGAAAGAGATGTCTC
TCTGAGACAGAGAGGAATCATATTTGTGTTTTGTGTTCCAGGCTTCGGTT
GAGAGATATGAAAGCAATTGAATAACACTTAGCACAGTGTGGTCATGGCA
GTTAAAACAAATACTTATTCTAGAGATGAGTCAATACATGAACCCATTAG
CGACTGCATAAATGGATAAACAGGTTGACACATCTCAGAGTACATGCATA
GTATTTACTGGCTTTGCACTCAGATGAGGTCAGATGTTTGGCCTTGGGAA
GATCAGTAATGACTCAGCTTATACAAAAGCTATTTAGTGTCTTTTTCCTT
CTATTTTGACAGAGCCTTTCTTTGATGTATAATTCCTTTATTTTTAAACA
CCAGACTCCATTTGTTTTCCATGTGTATACTTTAGCACTGGCAGTCCTA

GGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTATGCTTGCCTACAGT
CCAATCTGATGAGGGCATTTTCTTAATTGAGATTCCCTCTTCCAAAGTGA
CTCAAATCTGTGTCAAATTGACATAAAACTAGCCAGCATACTCTCCCACC
CTTTCCTCTTTTCTGCTCCTTCTCCCATTAGTTCTCTTCTTTCCTATATG
TAATTTTACTTTTATTTTATGTCATATATGTTTTGTTGTTTTATGTATGG
TTTTATTTATTATATAAAATCCAGTAGTCACAAGTGAATCTAAGACTCAC
AAATGCCATTTTACTGAAAATGACAGTTCAATGTTCTTTATGGCTGAATA
AAATATCATCATGTTTACACATAAATGCTCACAGACAAACACACATACAT
ACACACATGCATATACATGTGCACATACACACTCATGCATACATACATAT
ATAAAGACACACAAACACATTACATGCAAATGCATACACACATATACATG
CACACAAATACACACACACATACATAGACACATAAAGAGCACAAACACAC
ATACATGCAAATGCATTCACATGTGCTCATATATACACATGCACACACAT
ATACATACATAAAGACGCAAAAATACACATACACACATGCATATACAGGT
ACACACATATACATATGCACACATATATACATATGCACATAAAGACACAC
AAACACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_g04.b1 MSMg01no516_g04.b1 CHROMAT_FILE:
MSMg01no516_g04.b1 PHD_FILE: MSMg01no516_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:05 2005
         (666 letters)



>mm_chr7_47351978_47353043
          Length = 1066

 Score = 1282 bits (663), Expect = 0.0
 Identities = 663/663 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatgccatcactgtccagagagcgggacctctctccagatgcattctcagctgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatgccatcactgtccagagagcgggacctctctccagatgcattctcagctgc 263

                                                                       
Query: 64  agcaatgtggctcattgcctccagctctgcattgctttgtattccagttaggttcttgac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcaatgtggctcattgcctccagctctgcattgctttgtattccagttaggttcttgac 323

                                                                       
Query: 124 aggtgaggtcttatatatgtatatatatttttccttctacgaagaaaaaatatgtttgac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggtgaggtcttatatatgtatatatatttttccttctacgaagaaaaaatatgtttgac 383

                                                                       
Query: 184 ttctggaaatatctatagctgagaaaaagtaagcccatttgatatcagcagagttgttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctggaaatatctatagctgagaaaaagtaagcccatttgatatcagcagagttgttta 443

                                                                       
Query: 244 ctgttaagtcaggatgtgccttcattctcattcaaagcatactgaaagagatgtctctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgttaagtcaggatgtgccttcattctcattcaaagcatactgaaagagatgtctctct 503

                                                                       
Query: 304 gagacagagaggaatcatatttgtgttttgtgttccaggcttcggttgagagatatgaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagacagagaggaatcatatttgtgttttgtgttccaggcttcggttgagagatatgaaa 563

                                                                       
Query: 364 gcaattgaataacacttagcacagtgtggtcatggcagttaaaacaaatacttattctag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcaattgaataacacttagcacagtgtggtcatggcagttaaaacaaatacttattctag 623

                                                                       
Query: 424 agatgagtcaatacatgaacccattagcgactgcataaatggataaacaggttgacacat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatgagtcaatacatgaacccattagcgactgcataaatggataaacaggttgacacat 683

                                                                       
Query: 484 ctcagagtacatgcatagtatttactggctttgcactcagatgaggtcagatgtttggcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctcagagtacatgcatagtatttactggctttgcactcagatgaggtcagatgtttggcc 743

                                                                       
Query: 544 ttgggaagatcagtaatgactcagcttatacaaaagctatttagtgtctttttccttcta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgggaagatcagtaatgactcagcttatacaaaagctatttagtgtctttttccttcta 803

                                                                       
Query: 604 ttttgacagagcctttctttgatgtataattcctttatttttaaacaccagactccattt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttttgacagagcctttctttgatgtataattcctttatttttaaacaccagactccattt 863

              
Query: 664 gtt 666
           |||
Sbjct: 864 gtt 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_g04.g1 MSMg01no516_g04.g1 CHROMAT_FILE:
MSMg01no516_g04.g1 PHD_FILE: MSMg01no516_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:06 2005
         (666 letters)



>mm_chr7_47512638_47513703
          Length = 1066

 Score = 1131 bits (585), Expect = 0.0
 Identities = 585/585 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtatgcttgcctacagtccaatctgatgagggcattttcttaattgagattccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 attgtatgcttgcctacagtccaatctgatgagggcattttcttaattgagattccctct 526

                                                                       
Query: 61  tccaaagtgactcaaatctgtgtcaaattgacataaaactagccagcatactctcccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tccaaagtgactcaaatctgtgtcaaattgacataaaactagccagcatactctcccacc 466

                                                                       
Query: 121 ctttcctcttttctgctccttctcccattagttctcttctttcctatatgtaattttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctttcctcttttctgctccttctcccattagttctcttctttcctatatgtaattttact 406

                                                                       
Query: 181 tttattttatgtcatatatgttttgttgttttatgtatggttttatttattatataaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttattttatgtcatatatgttttgttgttttatgtatggttttatttattatataaaat 346

                                                                       
Query: 241 ccagtagtcacaagtgaatctaagactcacaaatgccattttactgaaaatgacagttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccagtagtcacaagtgaatctaagactcacaaatgccattttactgaaaatgacagttca 286

                                                                       
Query: 301 atgttctttatggctgaataaaatatcatcatgtttacacataaatgctcacagacaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atgttctttatggctgaataaaatatcatcatgtttacacataaatgctcacagacaaac 226

                                                                       
Query: 361 acacatacatacacacatgcatatacatgtgcacatacacactcatgcatacatacatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acacatacatacacacatgcatatacatgtgcacatacacactcatgcatacatacatat 166

                                                                       
Query: 421 ataaagacacacaaacacattacatgcaaatgcatacacacatatacatgcacacaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ataaagacacacaaacacattacatgcaaatgcatacacacatatacatgcacacaaata 106

                                                                       
Query: 481 cacacacacatacatagacacataaagagcacaaacacacatacatgcaaatgcattcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cacacacacatacatagacacataaagagcacaaacacacatacatgcaaatgcattcac 46

                                                        
Query: 541 atgtgctcatatatacacatgcacacacatatacatacataaaga 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  atgtgctcatatatacacatgcacacacatatacatacataaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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