BAC Information

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BAC

Clone NameMSMg01-516H15
Chromosome7 (Build37)
Map Location 112,216,416 - 112,217,102
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987
Downstream geneOlfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516H15.T7 (MSMg01no516_h15.b1)MSMg01-516H15.TJ (MSMg01no516_h15.g1)
ACCAG588462AG588463
length743749
length of high quality
(start - end)		691 (53 - 743)653 (82 - 734)
definitionCHROMAT_FILE: MSMg01no516_h15.b1 PHD_FILE: MSMg01no516_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:13 2005CHROMAT_FILE: MSMg01no516_h15.g1 PHD_FILE: MSMg01no516_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCTGTTGCCTTGTTTTCTGGTCTGAGTCATAACTTGT
AACATGATGCGGTAATGTATGTGAGCAAATTAGCCTATTACCTAACTATT
AACCACAGGGGGTGAATTTTGTGGTAGATGCTGGGTCACTCATAGTAGCC
ACACATTGGCTGGACTTGTTGGATCTAGACAGTGATGTTTCTACAGCAGT
GCTGTGGGTTGTGTTGTCTTGATGTTCCTTTGAGTACAATGAATTCTAAT
TTGGTGTCTATAGAATTGTCTTCAAAAACTGTGTTGGAAACATGGTATGT
CTCATTTAGATTGACATGTGCCCATATTATATCCCATTTCCTTTACTAAT
GTACTATGGAATTATTTCCAAATATGTGTTATAATTACTTATTTTGTGAT
TTTTTCACATCAGACTCAGTATCAGTAGCTTTCAAATTCACTTACCCTTC
ATTAGATCTCTCTTTGTATTCATCCCTAGCCATAACCTCAGCATATAATA
GGCCAAAGAGTTCTTTTAATTTTACTTTTCACTGAAAAGAATAATACTTC
AGATTGTTTTTTAGGAAAAGAGGTCTAGGTGACATTTAAAGAAATTTTTT
AGTGTTTAAAGGTATTATTTAAATATCAAAACATAGCTGAGATTGGTATC
TCTGTTCCCATTTACAAAGGTAGTAAATGAAGGTCAGGTTAAG

NTTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCC
CATTTTATAATGGGGTTGTTTGATTTTCTGGAGTCCACTTTCTTGAGTTC
TTTATACATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAGGA
TCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTT
GTGTTACAGAATCTTTGCAGTTTTATGAGGTCCCATTTGTCAATTCTCGA
ACTTACAGGACAAGCCATTGCTGTTCTATTCAGGAATGTTTCCCCTGTGC
CCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATTAGTTTCAGTGTC
TCTGGTTTTATGTGGAGTTCCTTGATCCATTTAGATTTGACCTTAGTACA
AGGAGATAGGAATGGATCAATTCGCACTCTTCTACATGATAACCGCCAGT
TGCCAGCACCATTTGTTGAAAATGCTGTGTTTTTTCCACTGGATGGTTTT
AGCTCCCTTGTCAAAGATCAAGTGACCATGGGTGTGTGGGTTCATATCTG
GGTCTTCAATTCTATTCCATTGGTCTACTTGTCCGTCGCTATACCAGTAC
CATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGATCAGGCAT
GGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTCTTGCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_h15.b1 MSMg01no516_h15.b1 CHROMAT_FILE:
MSMg01no516_h15.b1 PHD_FILE: MSMg01no516_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:13 2005
         (691 letters)



>mm_chr7_112216212_112217302
          Length = 1091

 Score = 1266 bits (655), Expect = 0.0
 Identities = 679/687 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctgttgccttgttttctggtctgagtcataacttgtaacatgatgcggtaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 891 gaattcatctgttgccttgttttctggtctgagtcataacttgtaacatgatgaggtaat 832

                                                                       
Query: 65  gtatgtgagcaaattagcctattacctaactattaaccacagggggtgaattttgtggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gtatgtgagcaaattagcctattacctaactattaaccacagggggtgaattttgtggta 772

                                                                       
Query: 125 gatgctgggtcactcatagtagccacacattggctggacttgttggatctagacagtgat 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 771 gatgctgggtcactcatagtagccacacattggctggacttgttgggtctagacagtgat 712

                                                                       
Query: 185 gtttctacagcagtgctgtgggttgtgttgtcttgatgttcctttgagtacaatgaattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gtttctacagcagtgctgtgggttgtgttgtcttgatgttcctttgagtacaatgaattc 652

                                                                       
Query: 245 taatttggtgtctatagaattgtcttcaaaaactgtgttggaaacatggtatgtctcatt 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 taatttggtggctatagaattgtcttcaaaaactgtgttggaaacatggtatgtctcatt 592

                                                                       
Query: 305 tagattgacatgtgcccatattatatcccatttcctttactaatgtactatggaattatt 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 591 tagattgacatgtgcccatattatatcccatttcctttactaatatactatggaattatt 532

                                                                       
Query: 365 tccaaatatgtgttataattacttattttgtgattttttcacatcagactcagtatcagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tccaaatatgtgttataattacttattttgtgattttttcacatcagactcagtatcagt 472

                                                                       
Query: 425 agctttcaaattcacttacccttcattagatctctctttgtattcatccctagccataac 484
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agctttcaaatttacttacccttcattagatctctctttgtattcatccctagccataac 412

                                                                       
Query: 485 ctcagcatataataggccaaagagttcttttaattttacttttcactgaaaagaataata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctcagcatataataggccaaagagttcttttaattttacttttcactgaaaagaataata 352

                                                                       
Query: 545 cttcagattgttttttaggaaaagaggtctaggtgacatttaaagaaattttttagtgtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 351 cttcagattgttttttaggaaaagaggtctaggtgacatttaaagaaatttcttagtgtt 292

                                                                       
Query: 605 taaaggtattatttaaatatcaaaacatagctgagattggtatctctgttcccatttaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 taaaggtattatttaaatatcaaaacatagctgagattggtatctctgttcccatttaca 232

                                      
Query: 665 aaggtagtaaatgaaggtcaggttaag 691
           ||||| ||||||||||||||| |||||
Sbjct: 231 aaggtggtaaatgaaggtcagtttaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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