Query= MSMg01no516_k21.b1 MSMg01no516_k21.b1 CHROMAT_FILE:
MSMg01no516_k21.b1 PHD_FILE: MSMg01no516_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:30 2005
(585 letters)
>mm_chr7_79200993_79201977
Length = 985
Score = 975 bits (504), Expect = 0.0
Identities = 522/528 (98%)
Strand = Plus / Minus
Query: 58 gtagcataagtaaaatcaaatacattatggtaaattaaaagggaaaaactaattttaaaa 117
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gtagcgtaagtaaaatcaaatacattatggtaaattaaaagggaaaaactaattttaaaa 926
Query: 118 ataaacaaatgagataattcaacccaaatactctaagcactggaaacaatcaaaggtaaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ataaacaaatgagataattcaacccaaatactctaagcactggaaacaatcaaaggtaaa 866
Query: 178 ctgcaactcagggaaataagtggaagactttgtaaattgtatgttcactaaggtgtcaat 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ctgcaactcagggaagtaagtggaagactttgtaaattgtatgttcactaaggtgtcaat 806
Query: 238 acttaaatatatgagggatttgtgatatttactcttcaatgctgatttgacttagatttt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acttaaatatatgagggatttgtgatatttactcttcaatgctgatttgacttagattta 746
Query: 298 ggatcaaataggagaaatatattggtatggctatgagagagttttcagagaagcttaact 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggatcaaataggagaaatatattggtatggctatgagagagttttcagagaagcttaact 686
Query: 358 aagagagataactgtcagtagagcatcatcccataggatggaatcttggacctgataaag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagagagataactgtcagtagagcatcatcccataggatggaatcttggacctgataaag 626
Query: 418 ataggaaaggaggaagagaggcaggcaatagtactcaacctggttgagaacatcaagtga 477
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 ataggaaaggaagaagagaggcaggcaatagtactcaacgtggttgagaacatcaagtga 566
Query: 478 tcaattgctcaggctgatgcttccttgccttccctctatgatggattgtgaccccataaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaattgctcaggctgatgcttccttgccttccctctatgatggattgtgaccccataaa 506
Query: 538 cccttaatcataatctacccatccctctttaacttgattttgtctcag 585
|||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 cccttaatcataatctacccatccctctttaacttggttttgtctcag 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_k21.g1 MSMg01no516_k21.g1 CHROMAT_FILE:
MSMg01no516_k21.g1 PHD_FILE: MSMg01no516_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:31 2005
(614 letters)
>mm_chr7_78994748_78995761
Length = 1014
Score = 1106 bits (572), Expect = 0.0
Identities = 602/614 (98%), Gaps = 4/614 (0%)
Strand = Plus / Plus
Query: 1 ttcacttggtgtggtggaaaacatctatgatgttagaacgctggagattgaggcagaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacttggtgtggtggaaaacatctatgatgttagaacgctggagattgaggcagaagt 260
Query: 61 gtcacaagttcgaagccagtctgagctacacaatgagaacttaccttaaagtaagtttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcacaagttcgaagccagtctgagctacacaatgagaacttaccttaaagtaagtttta 320
Query: 121 aaggaatggcttttagtacactgttggagcacttgcatagtggcttaaaactctggattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaatggcttttagtacactgttggagcacttgcatagtggcttaaaactctggattt 380
Query: 181 gaggcccagtgtctttctctttctatctttctctccctcccacctccacctccacgcata 240
|||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||
Sbjct: 381 gaggcccagtgtctttctctttctctctttctctccttcccacccccacctccatgcata 440
Query: 241 cctatacataccacacacacacacacacacacacacacacacacacacacactcaaacaa 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cctatacataccacacacacacacacacacacacacacacacacacac----tcaaacaa 496
Query: 301 acacagaaacacacattcttctttttacaatgcaaaccactagtgcaaagcctgtcacta 360
||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 497 acacagaaacataccttcttctttttacaatgcaaaccactagtgcaaagcatgtcacta 556
Query: 361 gtggtggagactcttgggtctcatgggtatgtttcatgaaagaggaatgctattactcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtggtggagactcttgggtctcatgggtatgtttcatgaaagaggaatgctattactcag 616
Query: 421 aatgctgcacctgcaacactgcttcctacctggcattctttgcattcaatgcatgtaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aatgctgcacctgcaacactgcttcctacctggcattctttgcattcaatgcatgtaccc 676
Query: 481 cgaatctctactcatgtttgtatggaccgaaacacccttagtacacatatgagagaaact 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cgaatctttactcatgtttgtatggaccgaaacacccttagtacacatatgagagaaact 736
Query: 541 gtcacctgccttttctgaatttgtcaattgctttattgccatttagttgtgtatgtatgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtcacctgccttttctgaatttgtcaattgctttattgccatttagttgtgtatgtatgt 796
Query: 601 atgtatgtatgtat 614
||||||||||||||
Sbjct: 797 atgtatgtatgtat 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
