BAC Information

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BAC

Clone NameMSMg01-517B24
Chromosome7 (Build37)
Map Location 11,161,234 - 11,328,788
singlet/doubletdoublet
Overlap geneV1re9, V1rl1, EG628596, Nlrp4b, LOC333184
Upstream geneLOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580
Downstream geneV1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517B24.T7 (MSMg01no517_b24.b1)MSMg01-517B24.TJ (MSMg01no517_b24.g1)
ACCAG588955AG588956
length774782
length of high quality
(start - end)		649 (29 - 677)597 (61 - 657)
definitionCHROMAT_FILE: MSMg01no517_b24.b1 PHD_FILE: MSMg01no517_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:06 2005CHROMAT_FILE: MSMg01no517_b24.g1 PHD_FILE: MSMg01no517_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:06 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(11,161,234 - 11,161,886)(11,328,194 - 11,328,788)
sequence
CGCTAATCGACTCACTATTTCGAGAGGATCCGCGGAATTCTTCGCTCCTA
ATGTCTTGGACTCTTTTTTTTTTTTTCTGGTTTGCTTTGTCCAACTTTGA
TGTGATTTTTTTTAACCTGTTGTATCTAATTTTGTTTTGTTTGGTGTTAT
GTCTTTGAAACATGTTCTTCACTGATGACAAAAAGGGAGTGGATCTGCAA
CAAAACTGAGGAATTGGGAGGAAAAGAAGGAAGGGAAGCTGTAATCAGTA
CATATTTTATGAGAATAGAATCTCTTTTCAATAAAATTTTACAAAAAGAA
AAATATCACATCAAATATGATAATCAATAAATTCCTGTCGGATTCCATCT
GTGTGGTTCATTTCATTTACTGATGAGTTTAGGTGGAACCGTCTCTAAAT
CTTTGGAAATATTATGATCCAACTCTTTTAAACTGAAATAAGTTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT
TATTTTTTGAGACAGTGCTTCTCTGTATAATCCTGGCTGTCCTGGAACTC
ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTTCCTCTGCC
TCCAGAGTGCTGGGATTAAAGGTGTGCACCACCACGCCCAGCGTCTGAAA
TAAGTTTTAACTGGCTGTCTGTACGTAGAAAAATGGAATAGACCCATATT
TGTCACCTTGCACAAATCTCAAGTCCAAGTGAATCAAGGACCTCAACATA
AAAACTGATACGCTCAATCTAACT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTGCTGTTCTGCTCTGCTCTTAATCAAGGTGGTGGTAT
GGCCACAACTTGACTCTCTTTATCCCAAATTCAAAAGAGTTATGTGCTGT
CACCAAGTGTGTACACTTTTTCCTGTCACCATGGTGTGAGATTTAACATG
AGGAGGTTGGTTGTTTGTCATCACCTTTGAAATGAGTGATTTCCATAAAA
ATGTGCTTTTTACATGCACAAGGTCTAAACCAAGAATGGAGAATGGAGTT
GGGTGTGAAAATTCCACTCCTCTCTGTTGATCTGTAATTGTTAGGTTCTG
GGAAGGTCAATTTTCTTTAAGAACTATCCCTGTCCACATTCTATTAAAAG
ACCACATGTTAAAGAATACTTGGATAATACATATTGGCATTGATGGGAGA
GCAAGGGATGACATAAATTTGGGTAGAAAGAGAAAAAGGATGGATCTGGG
AAGTGTTAAGAGGGGGGAGAGCGTGAATATGATCAAAACACACGATATTA
AATTCTCAAAAATAATAAAATTATAAAATGTACATTTTAAATACCTTCAT
TAGGAAACAGAAAAGAATAACACCTAACTCAATTGCTAGTAGGACTAAAA
GTCAAGTTAGCCCTTCTCANGATCTCAGTATTTGCCATTATTCTTTGAAG
GTAAGATAGGCTGAAAGTTACAGAGATGACCCAGCAGTTAAGTCCTAGAC
TGTTCCTGTAGAACATAAATTCACTTCCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_b24.b1 MSMg01no517_b24.b1 CHROMAT_FILE:
MSMg01no517_b24.b1 PHD_FILE: MSMg01no517_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:06 2005
         (649 letters)



>mm_chr7_11161026_11162074
          Length = 1049

 Score = 1058 bits (547), Expect = 0.0
 Identities = 622/655 (94%), Gaps = 14/655 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttcgctcctaatgtcttggactctttttttttttttctggtttgctttgtccaa 66
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 209 gaattcttcgctcctaatgtcttggactcttttttttttt--ctggtttgctttgtccaa 266

                                                                       
Query: 67  ctttgatgtgattttttttaacctgttgtatctaattttgttttgtttggtgttatgtct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctttgatgtgattttttttaacctgttgtatctaattttgttttgtttggtgttatgtct 326

                                                                       
Query: 127 ttgaaacatgttcttcactgatgacaaaaagggagtggatctgcaacaaaactgaggaat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgaaacatgttcttcactgatgacaaaaagggagtggatctgcaacaaaactgaggaat 386

                                                                       
Query: 187 tgggaggaaaagaaggaagggaagctgtaatcagtacatattttatgagaatagaatctc 246
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgggaggaaaagaaagaagggaagctgtaatcagtacatattttatgagaatagaatctc 446

                                                                       
Query: 247 ttttcaataaaattttacaaaaagaaaaatatcacatcaaatatgataatcaataaattc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttttcaataaaattttacaaaaagaaaaatatcacatcaaatatgataatcaataaattc 506

                                                                       
Query: 307 ctgtcggattccatctgtgtggttcatttcatttactgatgagtttaggtggaaccgtct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctgtcggattccatctgtgtggttcatttcatttactgatgagtttaggtggaaccgtct 566

                                                                       
Query: 367 ctaaatctttggaaatattatgatccaactcttttaaactgaaataagtttatttattta 426
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| 
Sbjct: 567 ctaaatttttggaaatattatgatccaactcttttaaactgaaataagtttctttctttc 626

                                                                       
Query: 427 tttatttatttatttatttatttatttatttatttatttatt------------tattta 474
           ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||            | ||||
Sbjct: 627 tttctttctttctttctttctttctttctttctttctttcttcctttctttctttcttta 686

                                                                       
Query: 475 ttttttgagacagtgcttctctgtataatcctggctgtcctggaactcactttgtagacc 534
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttattgagacagtgcttctctgtataatcctggctgtcctggaactcactttgtagacc 746

                                                                       
Query: 535 aggctggcctcgaactcagaaatctgccttcctctgcctccagagtgctgggattaaagg 594
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 747 aggctggcctcgaactcagaaatctgccttcctctgcctcccgagtgctgggattaatgg 806

                                                                  
Query: 595 tgtgcaccaccacgcccagcgtctgaaataagttttaactggctgtctgtacgta 649
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tgtgcaccaccacgcccagcgtctgaaataagttttaactggctgtctgtacgta 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_b24.g1 MSMg01no517_b24.g1 CHROMAT_FILE:
MSMg01no517_b24.g1 PHD_FILE: MSMg01no517_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:06 2005
         (597 letters)



>mm_chr7_11328194_11329189
          Length = 996

 Score = 1013 bits (524), Expect = 0.0
 Identities = 578/596 (96%), Gaps = 1/596 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgctgttctgctctgctcttaatcaaggtggtggtatggccacaacttgactctctt 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttttgctcttctgctctgctcttaatcaaggtggtggtatggccacaacttgactctctt 536

                                                                       
Query: 61  tatcccaaattcaaaagagttatgtgctgtcaccaagtgtgtacactttttcctgtcacc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 535 tatcccaaattcaaaagagttatgtgctgtcaccaagtgtgtacactttttcctgtcatc 476

                                                                       
Query: 121 atggtgtgagatttaacatgaggaggttggttgtttgtcatcacctttgaaatgagtgat 180
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 at-gtgtgagatttaaaatgaggaggttggttgtttgtcatcacctttgaaatgagtgat 417

                                                                       
Query: 181 ttccataaaaatgtgctttttacatgcacaaggtctaaaccaagaatggagaatggagtt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 416 ttccataaaaatgtgctttttacatgcacaaggtctaaaccaaggatggagaatggagtt 357

                                                                       
Query: 241 gggtgtgaaaattccactcctctctgttgatctgtaattgttaggttctgggaaggtcaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 356 gggtgtgaaaattccactcctctctgttgatctgtaattgttagcttctgggaaggtcaa 297

                                                                       
Query: 301 ttttctttaagaactatccctgtccacattctattaaaagaccacatgttaaagaatact 360
           ||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 296 ttttcgttaagaactgtccctgtccacattctagtaaaagaccacatgttcaagaatact 237

                                                                       
Query: 361 tggataatacatattggcattgatgggagagcaagggatgacataaatttgggtagaaag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 236 tggataatacatattggcattgatgggagagcaagggatgacataaatttgggtggaaag 177

                                                                       
Query: 421 agaaaaaggatggatctgggaagtgttaagaggggggagagcgtgaatatgatcaaaaca 480
           ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 176 agaaaaaggatggatttgggaagtgttaagagggtggagagcatgaatatgatcaaaaca 117

                                                                       
Query: 481 cacgatattaaattctcaaaaataataaaattataaaatgtacattttaaataccttcat 540
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 116 catgatattaaattctcaaaaataataaaattataaaatgtgcattttaaataccttcat 57

                                                                   
Query: 541 taggaaacagaaaagaataacacctaactcaattgctagtaggactaaaagtcaag 596
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  caggaaacagaagagaataacacctaactcaattgctagtaggactaaaagtcaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space:   578782
Effective search space used:   578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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