Query= MSMg01no517_l24.b1 MSMg01no517_l24.b1 CHROMAT_FILE:
MSMg01no517_l24.b1 PHD_FILE: MSMg01no517_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:56 2005
(446 letters)
>mm_chr7_83935165_83936010
Length = 846
Score = 731 bits (378), Expect = 0.0
Identities = 427/446 (95%), Gaps = 8/446 (1%)
Strand = Plus / Minus
Query: 5 gaattccactgagccacacacatcttatgttgactccaagagacaaaagcaatgactaaa 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattctactgagccacacacatcttatgttgactccaagagacaaaagcaatgactaaa 466
Query: 65 ggccccctaaccttaggccctgacttcctttttctccaaatgcatgttagttcagaattc 124
||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 465 ggctccctaacctcaggccctgacttcctttttctccaaatgcctgttagttcagaattc 406
Query: 125 tccaagacatttctcctgtcatagtctgattttaaaataactttcccccatgttgataaa 184
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 405 tccaagacatttctcctgtcgtagtctgattttaaaataacttccccccatgttgataaa 346
Query: 185 acagaggcaatccattccagtaaatgtcaactacaattctacaaacataaccacctagtg 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 345 acagaggcaatccattccagtaaatgtcaactacaattctacaaacatgaccacctagtg 286
Query: 245 tactcatacctaaagggttttctttttttagggatgagtttttaggc-agagatcttttt 303
|||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct: 285 tactcatacctaaagggttttc-ttttttagggatgagtttttaggctagtgatcttttt 227
Query: 304 tctacccactgaaaacattttcttataaaaaaaaatttt---aaaaaaagatgctggaat 360
||| |||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 226 cctatccactgaaaatattttcttataaaaaaa---tttaaaaaaaaaagatgctggaat 170
Query: 361 caattggcacttgcccagaagtctctctaaccagctgatgatagaatatctaagtttatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 caattggcacttgcccagaagtctctctaaccagctgatgatagaatatctaagtttatc 110
Query: 421 ttaaatcagagttgtatattctagaa 446
||||||||||||||||||||||||||
Sbjct: 109 ttaaatcagagttgtatattctagaa 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_l24.g1 MSMg01no517_l24.g1 CHROMAT_FILE:
MSMg01no517_l24.g1 PHD_FILE: MSMg01no517_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:56 2005
(538 letters)
>mm_chr7_83752380_83753317
Length = 938
Score = 1002 bits (518), Expect = 0.0
Identities = 533/538 (99%)
Strand = Plus / Plus
Query: 1 atcaaaacagagagacatctgttactcctgcctctgaaaagccatacacagtcttttcta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 atcaaaacagagagacatctgttactcctgcctctgaaaacccatacacagtcttttcta 260
Query: 61 agcatgcaagtggcgtctacatgaaattaagacatgtgtctagactatgggacattagca 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcatgcaagtggtgtctacatgaaattaagacatgtgtctagactatgggacattagca 320
Query: 121 aagaaggtataatagaaaactggagaaagaaaattgaaggcaatataggaataacatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaggtataatagaaaactggagaaagaaaattgaaggcaatataggaataacatgca 380
Query: 181 cttttattctgtatttagaaagtacacattaaatatttataggagaaaagctgaaatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttattctgtatttagaaagtacacattaaatatttataggagaaaagctgaaatttc 440
Query: 241 tgtgaagtcaaagtaatatccctcaaggaaatatcacatttgtcagcgtgggaccaatca 300
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 441 tgtgaagtcaaagtaatatccctcaaggaaatatcacatttgtcagcatcggaccaatca 500
Query: 301 gcatgagatacagaaaattatagtggtcaactgaagatcaacttcacccaagaaaagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatgagatacagaaaattatagtggtcaactgaagatcaacttcacccaagaaaagaat 560
Query: 361 tactgtaccattgtaaatctgatggaaggccatgctaatataaagattataatcttgcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactgtaccattgtaaatctgatggaaggccatgctaatataaagattataatcttgcca 620
Query: 421 tcaatgtaggtgagctttaatgaaatctctgtataggtacacagtgtgagttcattcaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaatgtaggtgagctttaatgaaatctctgtataggtacacagtgtgagttcattcaca 680
Query: 481 tatgtataatattgagtcccattggtctaatctataacattcttctaggtaaaatcag 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tatgtataatattgagtcccattggtccaatctataacattcttctaggtaaaatcag 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
