Query= MSMg01no517_o07.b1 MSMg01no517_o07.b1 CHROMAT_FILE:
MSMg01no517_o07.b1 PHD_FILE: MSMg01no517_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:08 2005
(645 letters)
>mm_chr7_125689061_125690105
Length = 1045
Score = 1064 bits (550), Expect = 0.0
Identities = 622/664 (93%), Gaps = 31/664 (4%)
Strand = Plus / Plus
Query: 1 cactggatcagctttgaggaggcacagtaggtcaccaggagcctggaaacaaactagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactggatcagctttgaggaggcacagtaggtcaccaggagcctggaaacaaactagatg 260
Query: 61 cattcttacctgactctacaagagccctgaggctacagaattacacccaccaaccaaggt 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cattcttacctgactctacaagagccctgaggctacagaaccacacccaccaaccaaggt 320
Query: 121 catttccatggcaagtttgtgtgtgtgtgtgtgtgtgtgttatatgagtgtgtacatggt 180
|||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 321 catttccatggcaagtgtgtgtgtgtgtgtgtgtgt-tg-tatatgagtgtgtacatggt 378
Query: 181 tgtgcacgcaggtgtgtgaatgcatgcagagagcagagactgacatcaggtgcctccctg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 tgtgcacgcaggtgtgtgaatgcatgcagagggcagagactgacatcaggtgcctccctg 438
Query: 241 tgccatgctccacctgattttctgagacaggatctctcactgggcggggagcttactgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgccatgctccacctgattttctgagacaggatctctcactgggcggggagcttactgat 498
Query: 301 aaggctgaggtggctggccactgagccccaggaatctccaccatctccagctctctaatg 360
|||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 499 aaggctgacgtggctggccactgaggcccagggatccccaccatctccagctctctaatg 558
Query: 361 ctggggtgtgcacaagctgccactccaggctttacctagatactgacgatctgatttcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctggggtgtgcacaagctgccactccaggctttacctagatactgacgatctgatttcag 618
Query: 421 gtcttcatgtttgtatggccagtgagtactgagtgactgtactgagtcatttacttggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtcttcatgtttgtatggccagtgagtactgagtgactgtactgagtcatttacttggcc 678
Query: 481 catgtatgtatgtatgtatgca------------------------tgtatgtatgtgca 516
|||||||||||||||||||| | ||||||||||||||
Sbjct: 679 catgtatgtatgtatgtatgtaggtatgtaggtatgtatgtatgtatgtatgtatgtgca 738
Query: 517 tatttggggttttgttttgtttttgagatagggtttcctctgtgttaacagctctgacta 576
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 739 tatttggggttttgtttt-----tgagatagggtttcctctgtgttaacagctctgaccg 793
Query: 577 tcctggaactcactctgtagactagcctagccttgaacttacagagatgtgccctcttct 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tcctggaactcactctgtagactagcctagccttgaacttacagagatgtgccctcttct 853
Query: 637 tcct 640
||||
Sbjct: 854 tcct 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_o07.g1 MSMg01no517_o07.g1 CHROMAT_FILE:
MSMg01no517_o07.g1 PHD_FILE: MSMg01no517_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:08 2005
(652 letters)
>mm_chr7_125856687_125857738
Length = 1052
Score = 1237 bits (640), Expect = 0.0
Identities = 649/652 (99%)
Strand = Plus / Minus
Query: 1 tgagaatggcaacttggagaacaaccctattcccagagaactaggtacctctcaattgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tgagaatggcaacttggagaacaaccctattcccagagaactaggtacctctcaattgca 793
Query: 61 aaagtagtcattaaaaagagagtccgggattctacaattgtgcaagagggcactacattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aaagtagtcattaaaaagagagtccgggattctacaattgtgcaagagggcactacattt 733
Query: 121 ctcacaccagttaccacttgcaagcaaggtttattttaagggagtcttgatgacaaggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctcacaccagttaccacttgcaagcaaggtttattttaagggagtcttgatgacaaggtg 673
Query: 181 atcccaacctcaaacctaccaccccatactttagcatcaggcattactggtccatggtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atcccaacctcaaacctaccaccccatactttagcatcaggcattactggtccatggtcc 613
Query: 241 acttacattcacaccagcctcagcaggtccaggcatgccttttctactccatttctacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acttacattcacaccagcctcagcaggtccaggcatgccttttctactccatttctacct 553
Query: 301 aattacgagtgacctttgtccaggaagtctcttggcaaaccctatagcctcatggctcct 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aattacaagtgacctttgtccaggaagtctcttggcaaaccctatagcctcatggctcct 493
Query: 361 atctgcttattcataacctgtactcagaaatgtcactgaaaggaaaggcgaaggtaacac 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atctacttattcataacctgtactcagaaatgtcactgaaaggaaaggcgaaggtaacac 433
Query: 421 agcttccaaggttggctgcttaccactaagtttttccacaaacacataaacttcctacag 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agcttccaaggctggctgcttaccactaagtttttccacaaacacataaacttcctacag 373
Query: 481 agtctgtaaagggagaaagatatgctgtttaaggacatactagctgttcgtacattcatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agtctgtaaagggagaaagatatgctgtttaaggacatactagctgttcgtacattcatg 313
Query: 541 gtaggctaatatccctggaccccaccatctataaagtggggctctgtctcaaggcgattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtaggctaatatccctggaccccaccatctataaagtggggctctgtctcaaggcgattt 253
Query: 601 tatgagaaaacaatgagctaaggcacagacagcaatcgcaggactgtatgta 652
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatgagaaaacaatgagctaaggcacagacagcaatcgcaggactgtatgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
