BAC Information

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BAC

Clone NameMSMg01-517P11
Chromosome7 (Build37)
Map Location 30,399,113 - 30,399,725
singlet/doubletsinglet
Overlap genenone
Upstream geneC330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik
Downstream gene1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517P11.T7 (MSMg01no517_p11.b1)MSMg01-517P11.TJ (MSMg01no517_p11.g1)
ACCAG589586AG589587
length761764
length of high quality
(start - end)		667 (37 - 703)612 (69 - 680)
definitionCHROMAT_FILE: MSMg01no517_p11.b1 PHD_FILE: MSMg01no517_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:14 2005CHROMAT_FILE: MSMg01no517_p11.g1 PHD_FILE: MSMg01no517_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGC
AGGTCAGGAAGCAGGAGCTGGTGCAGAGGCCATGGAGGGATGATACTTAC
TGACTTGCTTCCCCTGCCTTGCTCAGCCTGCTTTCTTATAGAACCCAAGA
CCCAGGGGTTCTTATAGAACCCAGGGATGGCACCACCCACAAGGGGCCGT
ATCCTCCTACCCTTGATCTCTAATTGAGAAAATGCCTTACAGCTGGATCG
CATGGAGGTATTTCCTCAAGGGAGGCTCCTTTCTCTGTGATAACTCCAGC
TTGTGTCAAGTTGACACACAAAACAAGCCAGTACAGATGGTAAACAGGAC
AAAGGGGGTATGGACCTGTTTAGAAGTAGTTCTTTGAGGCAATTCCAATA
TCTGTTGTCAGGATACCAGCAGTCCAGTTCAGTACTGTCAGGGCACCAAA
CACGAATCAGCAGTGGTGGCACGATCCAGCAGAAACAGCCAGGTCTTTGC
TGAATAAGCATGGGTCAGCAGGAGTGACCAGAACCAGTCTGGATGCCAGG
AGTTCTCTTTCCCACCTTCTCTCAATGAGGTAAAGATCAGCAAAGGTGAA
AGACTGATGAAGAGCTGCACAGATCACCATGCAAGCCCATGTCACTGTCC
ACTGAGTATTATTTATACTCTCTCCAAACATCACATGTCCTCCTATGGGT
CTTACCTCAGCAAAACACCACTTGAGTCTGCATCACATGACATAACCAGG
AACTTCCACTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTCACAGTAGTTAAAAAAAAAACTGGGTAGG
ACATTTTAAGGCCAACAGTAAACACTGAAATCCTGTTTAAAACTAAGGAG
GTCACAATGAAACACCACAAACATCAAAATCGACATGAAACAGACATGTT
TTTATAAAATTAAAGGTGTGTGTTAAGGATGTGTGTGTATTTCCAGCCAG
AGGAATTAAAGGTGTGTGTTAAGGGCTGAGCCACAACACAGCTAGAAACA
GGGTTTTTCCCCCCAGTAACTAACACAAACTTGGGGTTCAGAGTGCGATC
AAATATCCTGCAACAAAAGAATATCTTTGTTATGATATATTCCAAAAATA
TTTGTAAAAAACTCACTCTGTGAGATCAGCATAACTTATTTGGTTCAATC
AACCTTTTTTAAAAAAATTATTTCAAATTTTAGTTTCCTAATGTGACTTT
GTAGTGCCAGGGAAATGTTACTAATCCTCCTCCCAAAAAACAGACAGGAG
CTGATCTGATGCAACTCACAGCAGCATCTTTATTCTATTTGAGCTAGCTT
GGGCCCCACCCCCAACACACCACTGTCATGCAGAATGGTTTTAGTGATAG
GGGAGCTCTATCTATCAGGGCAAGGCTTTATAGTAAGCAGCAACTGGGAG
GTAAGTGTGCATGTATCTAATTGGAAAGGCACTGTGGTCTTTAACATAAG
TGGCTGGTGCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_p11.g1 MSMg01no517_p11.g1 CHROMAT_FILE:
MSMg01no517_p11.g1 PHD_FILE: MSMg01no517_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:14 2005
         (612 letters)



>mm_chr7_30398913_30399925
          Length = 1013

 Score = 1162 bits (601), Expect = 0.0
 Identities = 610/613 (99%), Gaps = 1/613 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcacagtagttaaaaaaaaaa-ctgggtaggacattttaaggccaacagtaaacactg 59
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcacagtagttaaaaaaaaaaactgggtaggacattttaaggccaacagtaaacactg 260

                                                                       
Query: 60  aaatcctgtttaaaactaaggaggtcacaatgaaacaccacaaacatcaaaatcgacatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcctgtttaaaactaaggaggtcacaatgaaacaccacaaacatcaaaatcgacatg 320

                                                                       
Query: 120 aaacagacatgtttttataaaattaaaggtgtgtgttaaggatgtgtgtgtatttccagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagacatgtttttataaaattaaaggtgtgtgttaaggatgtgtgtgtatttccagc 380

                                                                       
Query: 180 cagaggaattaaaggtgtgtgttaagggctgagccacaacacagctagaaacagggtttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaggaattaaaggtgtgtgttaagggctgagccacaacacagctagaaacagggtttt 440

                                                                       
Query: 240 tccccccagtaactaacacaaacttggggttcagagtgcgatcaaatatcctgcaacaaa 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccccagtaactaacacaaacttggggttcagagtgcgatcaaatatcctgcaacaaa 500

                                                                       
Query: 300 agaatatctttgttatgatatattccaaaaatatttgtaaaaaactcactctgtgagatc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatatctttgttatgatatattccaaaaatatttgtaaaaaactcactctgtgagatc 560

                                                                       
Query: 360 agcataacttatttggttcaatcaaccttttttaaaaaaattatttcaaattttagtttc 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcataacttatttgattcaatcaaccttttttaaaaaaattatttcaaattttagtttc 620

                                                                       
Query: 420 ctaatgtgactttgtagtgccagggaaatgttactaatcctcctcccaaaaaacagacag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaatgtgactttgtagtgccagggaaatgttactaatcctcctcccaaaaaacagacag 680

                                                                       
Query: 480 gagctgatctgatgcaactcacagcagcatctttattctatttgagctagcttgggcccc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagctgatctgatgcaactcacagcagcatctttattctatttgagctagcttgggcccc 740

                                                                       
Query: 540 acccccaacacaccactgtcatgcagaatggttttagtgataggggagctctatctatca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acccccaacacaccactgtcatgcagaatggttttagtgataggggagctctatctatca 800

                        
Query: 600 gggcaaggcttta 612
           |||||||||||||
Sbjct: 801 gggcaaggcttta 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space:   603806
Effective search space used:   603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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