BAC Information

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BAC

Clone NameMSMg01-518A21
Chromosome7 (Build37)
Map Location 97,875,358 - 97,876,012
singlet/doubletsinglet
Overlap geneLOC666689
Upstream geneMe3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik
Downstream geneLOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518A21.T7 (MSMg01no518_a21.b1)MSMg01-518A21.TJ (MSMg01no518_a21.g1)
ACCAG589654AG589655
length777775
length of high quality
(start - end)
723 (46 - 768)654 (75 - 728)
definitionCHROMAT_FILE: MSMg01no518_a21.b1 PHD_FILE: MSMg01no518_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:21 2005CHROMAT_FILE: MSMg01no518_a21.g1 PHD_FILE: MSMg01no518_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTATAACAAGCTGGCCTCAAACTCAGAAATTCACCTGTCT
CTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCTGGCATG
CAAAAATCTTTTCAGATTATTATGTCTTCAATAAAATGGTAAGAAATAAC
AAGAATTGATAAGAATGTATAGAAAACAAAACACTCATATATTGTTCCTG
AGAATATAAAATTATATAACTGCTTTTAAAAGCAGCTTGAACATTCTTTA
TAATACTATACATAAAGTCGCCATATGACCCAAAATATAATTTTGCAAAT
ACCCAATAAAACAGAAAGCACATAACCACATAAAAACTCACAAAAGAATA
TTCATGCCATTACTCATGATGTTCAAAGATGCAAGCATTTCTTGTGTCTG
TTGACTATAAATGGATTAAAAGAAGTATTATAACCGAATAGTTACACAGC
AGCTAACAGACAACTATCCACCAATCAAGTAATAAAAGATAGATACTTGT
AATGATATAAGGACCTTGAGAATATATGAAAGTTAAAGCAAGCAATTGCA
AAAGGCTGCATATTACACAAGTCTATCTTTAGGAATGGCCTTGAATACGC
AATTCTGGGAGGGGGAAAGTAGATCCTTACTTCTGGGAGAAGAGAGACAT
TGGCCACAGAGTAACTACTAAGGGGGGTAGAGTTTCTCTGAGGGTCATGA
ACATATTCTAAAATTCATTAANGTGAA
ATTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTTTGATATAATTCGTACTAGTCG
TAACATTTGCCCAATTTTCCTACTACAAAGTTGGAGTATTCTCAATTATT
GAAATGAGCCAGATGGTGGTGGCACATGTCTTTAATCCCAGCACTCAGAA
GGCAGAGGCAGGCTGATATCTATGAGTTTGGTGGTATTTTGGTTTACAGA
GTGAGTTCCAGGAAAGCCAGGTTATACAGTGAAACCCTGTCTCAAAAACA
TGTTACAATGTACACTGTATGCTTTGTGTACAGATGTAGTTGTTAGTATT
TCATTTTCCTTGCTACATACTACACTAAGCCATCTGTGACATCATTAGTT
CATAATAAAATAACTATATTTCTAACTCTTGGAAGTTATCTTGGTTCTGA
TCCATTCTGCTAGTTCATTCTTATTAGACCCTTATTTCTAATCTTTGTGC
TTTAGCAATTATATCATTAAAAGCATTTGTACATAGACTTATATATTCTG
TCAGATAACTGATAGAGCACTAATATCTAGGCAATTAAGTCTATTGTTTC
TCCTTGTTGTGGATTATCTTGGTATTGTTTGTATTTTTATGCTAATTCTG
CTTCCTCAAGAGGGGCTGCCTTGACAATTACATACTCAGGTGATTCCATG
TGAACCTTCTCTCCATTTTAACTGGTCAAATAAAGGCTAGAGCCTGTGAT
TGGGCAGTGGAAGGGAAAGGTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_a21.g1 MSMg01no518_a21.g1 CHROMAT_FILE:
MSMg01no518_a21.g1 PHD_FILE: MSMg01no518_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:21 2005
         (654 letters)



>mm_chr7_97875159_97876212
          Length = 1054

 Score = 1228 bits (635), Expect = 0.0
 Identities = 650/655 (99%), Gaps = 1/655 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttgatataattcgtactagtcgtaacatttg-cccaattttcctactacaaagttg 59
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 200 cattttgatataattcgtactagttgtaacatttgtcccaattttcctactacaaagttg 259

                                                                       
Query: 60  gagtattctcaattattgaaatgagccagatggtggtggcacatgtctttaatcccagca 119
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 gagtattctcaattattgaaatgagccagatggcggtggcacatgtctttaatcccagca 319

                                                                       
Query: 120 ctcagaaggcagaggcaggctgatatctatgagtttggtggtattttggtttacagagtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcagaaggcagaggcaggctgatatctatgagtttggtggtattttggtttacagagtg 379

                                                                       
Query: 180 agttccaggaaagccaggttatacagtgaaaccctgtctcaaaaacatgttacaatgtac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agttccaggaaagccaggttatacagtgaaaccctgtctcaaaaacatgttacaatgtac 439

                                                                       
Query: 240 actgtatgctttgtgtacagatgtagttgttagtatttcattttccttgctacatactac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actgtatgctttgtgtacagatgtagttgttagtatttcattttccttgctacatactac 499

                                                                       
Query: 300 actaagccatctgtgacatcattagttcataataaaataactatatttctaactcttgga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actaagccatctgtgacatcattagttcataataaaataactatatttctaactcttgga 559

                                                                       
Query: 360 agttatcttggttctgatccattctgctagttcattcttattagacccttatttctaatc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agttatcttggttctgatccattctgctagttcattcttattagacccttatttctaatc 619

                                                                       
Query: 420 tttgtgctttagcaattatatcattaaaagcatttgtacatagacttatatattctgtca 479
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttgtgctttaggaattatatcattaaaagcatttgtacatagacttatatattctgtca 679

                                                                       
Query: 480 gataactgatagagcactaatatctaggcaattaagtctattgtttctccttgttgtgga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gataactgatagagcactaatatctaggcaattaagtctattgtttctccttgttgtgga 739

                                                                       
Query: 540 ttatcttggtattgtttgtatttttatgctaattctgcttcctcaagaggggctgccttg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 ttatcttggtattgtttgtatttttatgctaattctgcttcctcaagagggtctgccttg 799

                                                                  
Query: 600 acaattacatactcaggtgattccatgtgaaccttctctccattttaactggtca 654
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acaattacatactcaggtgattccatgtgaaccttctctccattttaactggtca 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)