BAC Information

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BAC

Clone NameMSMg01-518F04
Chromosome7 (Build37)
Map Location 124,635,923 - 124,793,238
singlet/doubletdoublet
Overlap geneXylt1
Upstream geneNucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
Downstream geneLOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518F04.T7 (MSMg01no518_f04.b1)MSMg01-518F04.TJ (MSMg01no518_f04.g1)
ACCAG589859AG589860
length771775
length of high quality
(start - end)		683 (48 - 730)611 (79 - 689)
definitionCHROMAT_FILE: MSMg01no518_f04.b1 PHD_FILE: MSMg01no518_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:41 2005CHROMAT_FILE: MSMg01no518_f04.g1 PHD_FILE: MSMg01no518_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,635,923 - 124,636,601)(124,792,628 - 124,793,238)
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCAGTCCCACCCCCTCTTGTCTCTAACTTGTGAGATCACTC
CAATGGAGGATGGGGGTGGTGTTTGCCTATCAGAGACAGAGAGCTTGAGA
TGAAAATCACAGAGCTCAGCTCTCACCACAGCCACTTTCCTGCTGAGGAA
GACCTTGGAAACTATCGCTGTATCAATGCGATCTGAAGCCCACTGGAGCC
CAGGCTCAGCTCAGCCATCAAGATGCACCTGTGGGAGAGATGCTTAGATG
CTTAGCAAAGGACTATTAACTGATGACCAAGTTCTAGTAACAGCCTGTCT
CATGTGGCTATAACAAAATGTTTGAAGCTGGGTGAGATGGAGAGTAATCA
AGGAAGCCATCTGATGTTGGTCTCTGGCCACATGTGCATACACAGACACT
TGTTCACACACCAAAGAGATTAAAACAATCTCACCATTTAAAATGTTTTA
GGTCTCAGACATTTTGCTATCGACTACACACATGATGGTATTTTGGAAAT
TTGATTGGATCAGTGTCTCCCATTGCTTCCAACTTCTGTTTTACGATGGG
ACAGTCAGGCCCACATGTGGCTCTCAGGGTGTTGCGGGAGAACAGGCGGG
ATCTGGACTTGAACTGAGAGATGACCAGGAAAACATAGCCCTGGTAAGTT
GCAATTTTCCACAACTCTTTGCCTAACAGTCTTCTGAGAGGAAACAAAAG
GATTTCCTTTGTTGATGTNTC

NTCCAATGCATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTTCATTCACACCCACACAC
GTACACCTAAAAAACTCTTTAAATCTGGTACCTAAGTTTATCAGGAGTAC
TGATTTATCTTCTTGCTGTTCTCTTCCTCAGGTGGGTGTCGATGAACCCA
CATTGTTTTTTCTTTTTCTAAAAATTACTGCCAACACACACGTGCAAACA
CCCAGCCTCCCATGCAAAGCTTGTTTTACGTTGTATGCCTCTGGTCCGCA
CAGGTTGGCTGGCTAGGTAGGGCCCGAAAACAGCACAGGAGAGGAGGAAG
TGGGGAGCAGAGGACAGAAGGGAAGAGGGAGCCACAGAGACCAGAAACTC
TCCACTTGCAAAATAAAAAGCTGTTGCTTCTGCAGTGTGTAAATTGCACG
GCACTAAGAGGCTGCAGCGGCTCCCTAATAACAGCGTTCCACAAATCACT
GTCCCCTCTCTGCTAACTGCAGGCTTCCCTCTGCTTCCGATCTGGAGTTT
TAAGTCTTTATGTCCAATTAGAATGGCTGGGGAGACCTCCTTCCCGTGTT
GACGAGCCTCTCGAAATCACTGCCTTGTTACCGGGATGCCTCTGGGGCTC
TGCAGAAAGAGCCTGCATTGACTTCAGATGGCTGGGTCTTCCCTGCCCAC
GCTGGCACACTTTTGGTGTGACTATGGTGGGTGGGGAGCCTANNGCGCTG
TGCTGTTGCAGTTGCTTGGCTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_f04.b1 MSMg01no518_f04.b1 CHROMAT_FILE:
MSMg01no518_f04.b1 PHD_FILE: MSMg01no518_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:41 2005
         (683 letters)



>mm_chr7_124635719_124636801
          Length = 1083

 Score = 1220 bits (631), Expect = 0.0
 Identities = 667/679 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcagtcccaccccctcttgtctctaacttgtgagatcactccaatggaggat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcagccccaccccctcttgtctctaacttgtgagatcactccaatggaggat 264

                                                                       
Query: 65  gggggtggtgtttgcctatcagagacagagagcttgagatgaaaatcacagagctcagct 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 gggggtggtgtttgcctatcagagacagagagcttgaaatgaaaatcacagagctcagct 324

                                                                       
Query: 125 ctcaccacagccactttcctgctgaggaagaccttggaaactatcgctgtatcaatgcga 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 325 ctcaccacagccactttcctgctgaggaagaccttggaaactatcgctgtatcactgcgg 384

                                                                       
Query: 185 tctgaagcccactggagcccaggctcagctcagccatcaagatgcacctgtgggagagat 244
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 tctgaagccccctggagcccaggctcagctcagccatcaagatgcacctatgggagagat 444

                                                                       
Query: 245 gcttagatgcttagcaaaggactattaactgatgaccaagttctagtaacagcctgtctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttagatgcttagcaaaggactattaactgatgaccaagttctagtaacagcctgtctc 504

                                                                       
Query: 305 atgtggctataacaaaatgtttgaagctgggtgagatggagagtaatcaaggaagccatc 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtggctgtaacaaaatgtttgaagctgggtgagatggagagtaatcaaggaagccatc 564

                                                                       
Query: 365 tgatgttggtctctggccacatgtgcatacacagacacttgttcacacaccaaagagatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatgttggtctctggccacatgtgcatacacagacacttgttcacacaccaaagagatt 624

                                                                       
Query: 425 aaaacaatctcaccatttaaaatgttttaggtctcagacattttgctatcgactacacac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaacaatctcaccatttaaaatgttttaggtctcagacattttgctatcgactacacac 684

                                                                       
Query: 485 atgatggtattttggaaatttgattggatcagtgtctcccattgcttccaacttctgttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgatggtattttggaaatttgattggatcagtgtctcccattgcttccaacttctgttt 744

                                                                       
Query: 545 tacgatgggacagtcaggcccacatgtggctctcagggtgttgcgggagaacaggcggga 604
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 745 tacaatgggacagtcaggcccacatgtggctctcagggtgttgcgggagaacaggtggaa 804

                                                                       
Query: 605 tctggacttgaactgagagatgaccaggaaaacatagccctggtaagttgcaattttcca 664
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 805 tctggacttgaaccgagagatgaccaggaaaacatagccttggtaagttgcaattttcca 864

                              
Query: 665 caactctttgcctaacagt 683
           |||||||||||||||||||
Sbjct: 865 caactctttgcctaacagt 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_f04.g1 MSMg01no518_f04.g1 CHROMAT_FILE:
MSMg01no518_f04.g1 PHD_FILE: MSMg01no518_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:41 2005
         (611 letters)



>mm_chr7_124792428_124793438
          Length = 1011

 Score = 1181 bits (611), Expect = 0.0
 Identities = 611/611 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttcattcacacccacacacgtacacctaaaaaactctttaaatctggtacctaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 atgttcattcacacccacacacgtacacctaaaaaactctttaaatctggtacctaagtt 752

                                                                       
Query: 61  tatcaggagtactgatttatcttcttgctgttctcttcctcaggtgggtgtcgatgaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tatcaggagtactgatttatcttcttgctgttctcttcctcaggtgggtgtcgatgaacc 692

                                                                       
Query: 121 cacattgttttttctttttctaaaaattactgccaacacacacgtgcaaacacccagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cacattgttttttctttttctaaaaattactgccaacacacacgtgcaaacacccagcct 632

                                                                       
Query: 181 cccatgcaaagcttgttttacgttgtatgcctctggtccgcacaggttggctggctaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cccatgcaaagcttgttttacgttgtatgcctctggtccgcacaggttggctggctaggt 572

                                                                       
Query: 241 agggcccgaaaacagcacaggagaggaggaagtggggagcagaggacagaagggaagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agggcccgaaaacagcacaggagaggaggaagtggggagcagaggacagaagggaagagg 512

                                                                       
Query: 301 gagccacagagaccagaaactctccacttgcaaaataaaaagctgttgcttctgcagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gagccacagagaccagaaactctccacttgcaaaataaaaagctgttgcttctgcagtgt 452

                                                                       
Query: 361 gtaaattgcacggcactaagaggctgcagcggctccctaataacagcgttccacaaatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtaaattgcacggcactaagaggctgcagcggctccctaataacagcgttccacaaatca 392

                                                                       
Query: 421 ctgtcccctctctgctaactgcaggcttccctctgcttccgatctggagttttaagtctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctgtcccctctctgctaactgcaggcttccctctgcttccgatctggagttttaagtctt 332

                                                                       
Query: 481 tatgtccaattagaatggctggggagacctccttcccgtgttgacgagcctctcgaaatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tatgtccaattagaatggctggggagacctccttcccgtgttgacgagcctctcgaaatc 272

                                                                       
Query: 541 actgccttgttaccgggatgcctctggggctctgcagaaagagcctgcattgacttcaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 actgccttgttaccgggatgcctctggggctctgcagaaagagcctgcattgacttcaga 212

                      
Query: 601 tggctgggtct 611
           |||||||||||
Sbjct: 211 tggctgggtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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