BAC Information

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BAC

Clone NameMSMg01-518F05
Chromosome7 (Build37)
Map Location 149,313,336 - 149,313,977
singlet/doubletsinglet
Overlap genenone
Upstream genePtdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728
Downstream geneEG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518F05.T7 (MSMg01no518_f05.b1)MSMg01-518F05.TJ (MSMg01no518_f05.g1)
ACCAG589861AG589862
length773780
length of high quality
(start - end)		646 (51 - 696)579 (80 - 658)
definitionCHROMAT_FILE: MSMg01no518_f05.b1 PHD_FILE: MSMg01no518_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:41 2005CHROMAT_FILE: MSMg01no518_f05.g1 PHD_FILE: MSMg01no518_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCAGGTCCAAGAAATATCAAGACAACTACCCTGAGAAAG
CAGGTTGAAAAATTAAATCAGAAATACAAAAATGTATTTGGTCAGGTTTA
CAGAACTAGGGGCAAAAAGCAAATAGAGTGAGCTAGGGCATAGCCCACAA
GACTCAGATCCTGTGGACACAGAACATCTAGGTGAGCTGACTTGACAGAC
ATCGGTACATCTGGGGCGAGCAGGCTTGCTATCATCTAGAAAGCCCCAAA
GAGGGGAGAACAGATGTTCTACTGACTGTGATAGAGTCATCTCACGCTAG
GCCTGAAACAGAGGCTTGTAGAATTTTAGGCCTGCTGCTTCACTGACTTC
AGGGCATTTTCCTGGAGATTGCCTTAAATCATAGAGCATCAGACATTGTT
TTCACATGTCCTCTCTTGCTGGCATCATGTTATCAGCTTCCTAAGAGAGA
GGTGAAAATCAAAGAGGCTACACAGACATTAGCTGTTTTTGGAGTTTTTT
TGTTTTTGTTTTTGTTTTGTTTTGTTTTTTTAGATCTTTCTCTTTCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTC
TTTCCTTCTTGATTTATTCACTTGGTTTATGTAAGTACACTGTAGCTGTT
CTCCGACCACCCCGAAGAGGGCT

NNCCCATTGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTATAGGAAAGAAATTTT
AAGCATTCATTCAAACGTATCTTTAGCATGGCCATCTATGTCCTCATACA
GATAAAGAAAACAAAACAAACAAAACAAAATAAAACAAAACAGAACCTCT
GCTAGTCATCCTGCACCCAAGTCTCTCACTAACATGCAACCAAACTAGGA
GTTTATAGTTGACACTTACTAACAACCAAGCTTGCCCTGCAAGATCGCAT
ACCTGATAAGCACAAAATCAAACAGGATAGGAAATGAAGAGATGAACCCA
TGCATGAATTTGTTCACAAAGAGACAAACCAGGGCAGCAGAAAGATGAGA
CCAGCTGCTGGGTAAGAGTGTGCCCTCCTGATTACTCAGCTAAAAAAGAA
GGGGAGGGAGTGATGTCCTGATCAGGAAGGTTATAAGATGTGCTCTGCAT
TCATCCAGGGTGCCACCCATTCTCAGCTGAGGACAAGCTTTGCAAAGTTG
CAAACTATTCCATCTCACCTTTGCTGCTCTGAGCCCCCCAGGGCTCTCTT
ATGAAAGAAGGGTCCCTCTTCCTCATACTGACTTCCCAGCTAAGCTCACC
AAGGGACAGGAAAGGATGATGCTCTCAAAAAACTCACATCAAATTCTCTG
CTTTACCCTATAGAGGGCTAAATAGATGATGCTGGCTGAGGGGAAAGATG
AAAATTCTGTCTAGCGAAGTAAATCTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_f05.b1 MSMg01no518_f05.b1 CHROMAT_FILE:
MSMg01no518_f05.b1 PHD_FILE: MSMg01no518_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:41 2005
         (646 letters)



>mm_chr7_149313132_149314177
          Length = 1046

 Score = 1122 bits (580), Expect = 0.0
 Identities = 627/644 (97%), Gaps = 4/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaggtcca--agaaatatcaagacaactaccctgagaaagcaggttgaaaaa 62
           ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcagg--cagaagaaatatcaagacaactaccctgagaaagcaggttgaaaaa 262

                                                                       
Query: 63  ttaaatcagaaatacaaaaatgtatttggtcaggtttacagaactaggggcaaaaagcaa 122
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 263 ttaaatcagaaatacaaaaatgtatttggtcagctttacagaattaggggcaaaaagcaa 322

                                                                       
Query: 123 atagagtgagctagggcatagcccacaagactcagatcctgtggacacagaacatctagg 182
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 323 atagagtgagctagggcatagcccacaagactcagagcctgtggacacagaacatctagg 382

                                                                       
Query: 183 tgagctgacttgacagacatcggtacatctggggcgagcaggcttgctatcatctagaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgagctgacttgacagacatcggtacatctggggcgagcaggcttgctatcatctagaaa 442

                                                                       
Query: 243 gccccaaagaggggagaacagatgttctactgactgtgatagagtcatctcacgctaggc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccccaaagaggggagaacagatgttctactgactgtgatagagtcatctcacgctaggc 502

                                                                       
Query: 303 ctgaaacagaggcttgtagaattttaggcctgctgcttcactgacttcagggcattttcc 362
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgaagcagaggcttgtagaattttaggcctgctgcttcactgacttcagggcattttcc 562

                                                                       
Query: 363 tggagattgccttaaatcatagagcatcagacattgttttcacatgtcctctcttgctgg 422
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 563 tggagattgccttaaatcatagagcgtcagacattgttttcacatgtcctctcttgctgg 622

                                                                       
Query: 423 catcatgttatcagcttcctaagagagaggtgaaaatcaaagaggctacacagacattag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 catcatgttatcagcttcctaagagagaggtgaaaatcaaagaggctacacagacattag 682

                                                                       
Query: 483 ctgtttttggagtttttttgtttttgtttttgttttgttttgtttttttagatctttctc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgtttttggagtttttttgtttttgtttttgttttgttttgtttttttagatctttctc 742

                                                                       
Query: 543 tttcttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 602
           |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 743 tttctttcttcctttctttcttccttccttccttccttccttccttccttcctttctttc 802

                                                       
Query: 603 ttccttcctttctttctttctttctttctttccttctttctttc 646
           || ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 803 tttctttctttctttctttctttctttctttctttctttctttc 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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