BAC Information

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BAC

Clone NameMSMg01-518M14
Chromosome7 (Build37)
Map Location 12,986,992 - 12,987,696
singlet/doubletsinglet
Overlap genenone
Upstream geneZscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11
Downstream geneZfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518M14.T7 (MSMg01no518_m14.b1)MSMg01-518M14.TJ (MSMg01no518_m14.g1)
ACCAG590212AG590213
length759759
length of high quality
(start - end)		710 (50 - 759)681 (79 - 759)
definitionCHROMAT_FILE: MSMg01no518_m14.b1 PHD_FILE: MSMg01no518_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:18 2005CHROMAT_FILE: MSMg01no518_m14.g1 PHD_FILE: MSMg01no518_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAATATATAAAACCAGAAAAGAAACCCTTTATGCCATATA
AAGTTAAAATATTAAAAATAAATAATAAAGAATGAGTAATTATATTTAAA
CTAAAAATGTTTAAACTCTTCAAAATATGAAAATATCAGACCCAGCATAT
GGACCTAGCAGAACCTCAAAGAATAACTAATACTACCATTTCTCAAATTG
TTCCAATAAGCAGGTAAAGAAAGAATGTTTCCAAATTCTTTTTACAAAGT
CAATGTTTCTCTTGATGCCAAAACAAGACAAAGACTCAACATAAAAAAAC
TGAATTATAGGTGAATCTTCTTGATGAATTTAGATGCAAAAAGGCTCAGT
AAAATAGCTACAAACTAAATTCAAATTAGTCTTTTATACCTCACTCTCTG
TTTTCTGCCTGATCCATTCTATTAATGAAGCTTTCTACTAAGAATTCTAT
TTGGCTTATTAAGTTTTTCATTTACAATATCATTCCAGGTTGGGTGTCTA
TCATTTCTGCCTTTACTTTCATATCTTGGGATTCCTTTTCCCATTTAACT
CATCCCTTAGTTTTTGATCAAATTAGGAAGAGTATCTACTGTTATTCAAT
CAGCTTTACCCCAGAGATGCAGGGGTGGCCCAACATTACAAAATCAATAC
GTGTAATATATTACATAAACCGTCTCAAGGAGAGAACCACATGATCATAG
AATCATAAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCTAAAAATAATTTCTTA
ATTTTCTCCCTACTAAACAATTTCCCACATTCATCATTGTTGTGGATGGG
CCTGGTGCTGCTTGTATTTTGATGTTAATTCCGTTCTCCTAGGAGGGTTT
GCAGACAAGGAGTGTACTCAGGTGACTTCTTGTGAACCAATCTTCTAATA
AATAAAGGAGCCAATCACTGGCTTCACTGAGTAGGAGGGACTTCTGGGTT
GGCTGGAGGAAGAGAGGAGTTAGGTCCTTTTGGATGGGGATAGTGTGAAG
ACAAGATGTAGCTAAGAGTGTCTCCTGGTTTCAGTGGTGGACCCATCAGG
ATTTGATACTAGAGGATTTAGATTTAATAAGGTTTATGAGATTAGGATTT
TAGTTGTGCCCAGCAATTGAGTTGTTTCTGAACTAAGTTTTTGTGGTGTT
TTCCTTCACACAGCAGCTCATCTGGGTTCAAAAGAGAAAGGTATGGCAGC
AAAGCATGGGTTTGCCTGATGTGCACCACAAAGGCCGTGGGGGGATTTGA
AGCAGTGGGTTGGTGTGGTAGTGACCCGCCAGTGGGAACCTAGTGAGCTG
GGTGGAGAGATTATGGAGTTTTGAGTCAGTCTCCATGAGATAAAAACATG
GCCGGCTAGGCCACTGGGGCATAGAGCTGTTGTAGGTAATGAGGCTAGTT
TTTTACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_m14.b1 MSMg01no518_m14.b1 CHROMAT_FILE:
MSMg01no518_m14.b1 PHD_FILE: MSMg01no518_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:18 2005
         (710 letters)



>mm_chr7_12986787_12987896
          Length = 1110

 Score = 1288 bits (666), Expect = 0.0
 Identities = 696/706 (98%), Gaps = 1/706 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatatataaaaccagaaaagaaaccctttatgccatataaagttaaaatatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaaatatataaaaccagaaaagaaaccctttatgccatataaagttaaaatatt 265

                                                                       
Query: 65  aaaaataaataataaagaatgagtaattatatttaaactaaaaatgtttaaactcttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaaataaataataaagaatgagtaattatatttaaactaaaaatgtttaaactcttcaa 325

                                                                       
Query: 125 aatatgaaaatatcagacccagcatatggacctagcagaacctcaaagaataactaatac 184
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 326 aatatgaaaatatcagacccagcatatggacctaccagaacttcaaagaataactaatac 385

                                                                       
Query: 185 taccatttctcaaattgttccaataagcaggtaaagaaagaatgtttccaaattcttttt 244
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 386 taccatttctcaaattgttccaataagcaggtaaggaaagaatgcttccaaattcttttt 445

                                                                       
Query: 245 acaaagtcaatgtttctcttgatgccaaaacaagacaaagactcaacataaaaaaactga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 446 acaaagtcaatgtttctcttgatgccaaaacaagacaaagactcaacataaaaaa-ctga 504

                                                                       
Query: 305 attataggtgaatcttcttgatgaatttagatgcaaaaaggctcagtaaaatagctacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attataggtgaatcttcttgatgaatttagatgcaaaaaggctcagtaaaatagctacaa 564

                                                                       
Query: 365 actaaattcaaattagtcttttatacctcactctctgttttctgcctgatccattctatt 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 actaaattcaaattagtcttttatacctcaatctctgttttctgcctgatccattctatt 624

                                                                       
Query: 425 aatgaagctttctactaagaattctatttggcttattaagtttttcatttacaatatcat 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgaagctttctacaaagaattctatttggcttattaagtttttcatttacaatatcat 684

                                                                       
Query: 485 tccaggttgggtgtctatcatttctgcctttactttcatatcttgggattccttttccca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccaggttgggtgtctatcatttctgcctttactttcatatcttgggattccttttccca 744

                                                                       
Query: 545 tttaactcatcccttagtttttgatcaaattaggaagagtatctactgttattcaatcag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttaactcatcccttagtttttgatcaaattaggaagagtatctactgttattcaatcag 804

                                                                       
Query: 605 ctttaccccagagatgcaggggtggcccaacattacaaaatcaatacgtgtaatatatta 664
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 805 ctttaccccagagatgcaggggtggtccaatattacaaaatcaatacgtgtaatatatta 864

                                                         
Query: 665 cataaaccgtctcaaggagagaaccacatgatcatagaatcataaa 710
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 865 cataaaccatctcaaggagagaaccacatgatcatagaatcataaa 910


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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