BAC Information

Click to search

BAC

Clone NameMSMg01-518M23
Chromosome7 (Build37)
Map Location 133,924,932 - 133,925,414
singlet/doubletsinglet
Overlap geneTbx6
Upstream geneD430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3
Downstream genePpp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518M23.T7 (MSMg01no518_m23.b1)MSMg01-518M23.TJ (MSMg01no518_m23.g1)
ACCAG590230AG590231
length781791
length of high quality
(start - end)		621 (47 - 667)483 (77 - 559)
definitionCHROMAT_FILE: MSMg01no518_m23.b1 PHD_FILE: MSMg01no518_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:20 2005CHROMAT_FILE: MSMg01no518_m23.g1 PHD_FILE: MSMg01no518_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCATAATATCATTTTCCCAAACTCACAGATGTAGAACTGAAAC
AGGATGGGTGATAGAGCCATTCACTGCACCTTGATAAGAACTACAAGTGG
TGATGGACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCT
CTATGTGTTCAAGGATAGCCTGGTCTGCAGAGTGAGTTCCAGGACAGGCA
AGACTACACTGAGAAACCCTGTCTTGATGCCCCCTGCCACTTGTAACAAC
AACAACAAGACACTGTTTCTCTGTGTGATAGCCTTGGCTGTCCTGGACTC
GAGTTGTAGACCAGGCTGGCCTCAAAGTCATAGAAATCCACCTCTCCTTC
CTGAGCATTGGAATCAAAGGCATGTGCCACCATGCCTGGCTAGCTTCTTT
CCTTCCTTCCTTTTTCTTTCTTTCTCTCTTTCTTTCTTCCTAGACTAGTC
TCACTGGTGTCTTGAACTCCCTATATAGAACAAGCTAGCCTCATTCATAG
ACATCTACCTGTCTCTGTCTTCTAAATGCCACTAGCTTTTCCATGTAGTC
CAAGATCACCTTCCCAGAGAACGGTGCTACCTACAGTGGCTGGGCCTTCT
GTATGAATTAACATGGTAACGTGGTAGTGCACTCCTATAATCCTATATAA
TCCATTAGACAATTCCCTATAGCTAGGTCTGTCTGGGGAATTCTCACTGA
AGAATGCATTGTTCAGTGGCTCTAGGCCCTG

NCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCACAGTTCCTGGTTCTCCAA
GCTCAGGCTGACCCCAGGAAGCGAGTGAAGGGCCTCTGGGGGTGGCGGTG
CTGTCTCGGGGCCCAGAGCAGATGGGAGAAGGGGCAAAGGAGCGGCTGCA
GCCAGAGTGTGGGGAGCTGCCTCGATCCCAGAGAGGAAGCAATCCAGTTT
AGAAGTATCCAAATCTGGAGATGTGGGAAGAATGAGGATCCAGGGGAGGG
CCACATATTCCCAGTTTCCTGCCCCTTACCCAGAGCCAATCCAACCGCTC
ACCAGGGTAGCGGTAACCCTCTGTCAGGGCAGGTGGGAAGGTGGAGTCTG
CCCCAGGCTGGGGGTGTCCCAGACGGTAGCCAGTCCCCAGGGAGGGGTAC
AACTCTCGTGGATGGTACATGTTGTAGTTTCTTCTGGCCTTGTGTCCCGT
TGCTAGAATCCGGGGTCTAAGGGATGCCCCCTTTATAGCTCACAGCACAG
CCCCTTCCAAACCAGAGATCACAGCCCCTCCCCTCCTTGGGGCCCTGGAG
GTGGGCTGGAATGGAGACCCCTGGGGCCTAGAAGGGGTCCAAGAGGAGGC
CGGATACCTGGGTACCCTCCCCTCTCCCTCGCAGCTTCACTAGTCCCGAC
CCCCTACCCCCTCATTAATAAATAACTCCTCGGGCTGATTGATCCCTANG
GCTAANACAGGGACGCAGTTTGGCGCTTCGGGCCGCTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_m23.g1 MSMg01no518_m23.g1 CHROMAT_FILE:
MSMg01no518_m23.g1 PHD_FILE: MSMg01no518_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:20 2005
         (483 letters)



>mm_chr7_133924732_133925614
          Length = 883

 Score =  934 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccacagttcctggttctccaagctcaggctgaccccaggaagcgagtgaagggcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttccacagttcctggttctccaagctcaggctgaccccaggaagcgagtgaagggcctc 624

                                                                       
Query: 61  tgggggtggcggtgctgtctcggggcccagagcagatgggagaaggggcaaaggagcggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgggggtggcggtgctgtctcggggcccagagcagatgggagaaggggcaaaggagcggc 564

                                                                       
Query: 121 tgcagccagagtgtggggagctgcctcgatcccagagaggaagcaatccagtttagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcagccagagtgtggggagctgcctcgatcccagagaggaagcaatccagtttagaagt 504

                                                                       
Query: 181 atccaaatctggagatgtgggaagaatgaggatccaggggagggccacatattcccagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atccaaatctggagatgtgggaagaatgaggatccaggggagggccacatattcccagtt 444

                                                                       
Query: 241 tcctgccccttacccagagccaatccaaccgctcaccagggtagcggtaaccctctgtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcctgccccttacccagagccaatccaaccgctcaccagggtagcggtaaccctctgtca 384

                                                                       
Query: 301 gggcaggtgggaaggtggagtctgccccaggctgggggtgtcccagacggtagccagtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggcaggtgggaaggtggagtctgccccaggctgggggtgtcccagacggtagccagtcc 324

                                                                       
Query: 361 ccagggaggggtacaactctcgtggatggtacatgttgtagtttcttctggccttgtgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccagggaggggtacaactctcgtggatggtacatgttgtagtttcttctggccttgtgtc 264

                                                                       
Query: 421 ccgttgctagaatccggggtctaagggatgccccctttatagctcacagcacagcccctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccgttgctagaatccggggtctaagggatgccccctttatagctcacagcacagcccctt 204

              
Query: 481 cca 483
           |||
Sbjct: 203 cca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |