BAC Information

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BAC

Clone NameMSMg01-518O16
Chromosome7 (Build37)
Map Location 15,071,571 - 15,072,219
singlet/doubletsinglet
Overlap geneEG638251
Upstream gene9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik
Downstream geneB430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518O16.T7 (MSMg01no518_o16.b1)MSMg01-518O16.TJ (MSMg01no518_o16.g1)
ACCAG590312AG590313
length749749
length of high quality
(start - end)
700 (48 - 747)649 (82 - 730)
definitionCHROMAT_FILE: MSMg01no518_o16.b1 PHD_FILE: MSMg01no518_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:28 2005CHROMAT_FILE: MSMg01no518_o16.g1 PHD_FILE: MSMg01no518_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCTGTTCTGAGCCCCATTTTTTAATGCAGTTATTTGAT
TTTCATGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTGAGTAGTATCTTTTGCGTTGCAGAAGCTTTGCAGGTTCAA
GAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTCCCTCTATGCCCATATCTTTGAGGCTTTTCCCCACT
TTCTCCTCCATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGAGAGGAATGGATCTATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTTTTCCACTGTATGGCTTTAGCTCCCTTGTCGAAGATCAAATG
ACCATAGGTGTGTGGGTTCATTTCTGTGTCTTCAATTCTATTCCATTGGT
CTACTAGTCTGTCACTATATCAGTACCATGCAGTTTTTAATCACAATTGC
TCTGTAGTAAATATTTAGGTCAGGGATGGTGATTCCACCAGAGGTTCTTT
TATCCTTAAGAATAGATTTTGCTATCTTAGGTTTTTTGTTATTCCAGAA
AACCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAATTAACCTTTGAGAAACAA
ACAAATGTAGTAAAATCTAGGCTATGGAACTCAACAATGTTAAAAGGCAA
ATACCTTATACACATTTTAAAAACTTTCCAAATCATTATCCATCAAGGAA
ATAGAAATAAAAACTTACCCCAGTCAAAATGGCCATTGTCAAGAAAAAAA
ATATGTTTGGAGTATGGGGAAAAGAGAAGAAAATCTAAGTACAATGAGAT
GAGAAAAAGAGAAGATGCAGAAAATGTTTAAAAGTGTTGAAAGAGAATAT
AAGGGGAATGGTTTATTTTTTAGTTCAAAATCTGTCATAGATTTTTGTTT
TTCCTGTGGATAACTCAGTATTATACAAGTGATGTTAAAAGTATAACATT
TAATGAGAAGCTTCACAGATTCTCTTTTGAGTACTAAATCTAACAATATA
AATTCATTAAATGGTATAGAATTTGTGTCTCATTAAATTTCATATATTTT
GTTTTATTTATTTGCAAGTTTTTATAATAAAGTTTAGTTATTTTAAATTT
GAAAAATATGAAGAAAGAGAAACTCTTGTGGAACCTGACATATACATTAT
TTAAATCACTATGGAATTTACTCAAAAATTGGAAAACAAACTTCCATATG
GCCTAGCTATAGAATCTTAATTACATATTCAAACTACTTAGGTATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_o16.g1 MSMg01no518_o16.g1 CHROMAT_FILE:
MSMg01no518_o16.g1 PHD_FILE: MSMg01no518_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:29 2005
         (649 letters)



>mm_chr7_15071371_15072419
          Length = 1049

 Score = 1195 bits (618), Expect = 0.0
 Identities = 642/650 (98%), Gaps = 2/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaacctttgagaaacaaacaaatgtagtaaaatctaggctatggaactcaacaatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaacctttgagaaacaaacaaatgtagtaaaatctaggctatggaactcaacaatgtt 260

                                                                       
Query: 61  aaaaggcaaataccttatacacattttaaaaactttccaaatcattatccatcaaggaaa 120
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagacaaatgccttatacacattttaaaaactttccaaatcattatccatcaaggaaa 320

                                                                       
Query: 121 tagaaataaaaacttaccccagtcaaaatggccattgtcaagaaaaaaaa-tatgtttgg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tagaaataaaaacttaccccagtcaaaatggccattgtcaagaaaaaaaaatatgtttgg 380

                                                                       
Query: 180 agtatggggaaaagagaagaaaatctaagtacaatgagatgagaaaaagagaagatgcag 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 agtatggggaaaagagaagaaaatctaagtacaatgagatgagaaaa-gagaagatgcag 439

                                                                       
Query: 240 aaaatgtttaaaagtgttgaaagagaatataaggggaatggtttattttttagttcaaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaatgtttaaaagtgttgaaagagaatataaggggaatggtttattttttagttcaaaa 499

                                                                       
Query: 300 tctgtcatagatttttgtttttcctgtggataactcagtattatacaagtgatgttaaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgtcatagatttttgtttttcctgtggataactcagtattatacaagtgatgttaaaa 559

                                                                       
Query: 360 gtataacatttaatgagaagcttcacagattctcttttgagtactaaatctaacaatata 419
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 560 gtataacatttaatgagaagcttcacagattctcgtttgagtactaattctaacaatata 619

                                                                       
Query: 420 aattcattaaatggtatagaatttgtgtctcattaaatttcatatattttgttttattta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aattcattaaatggtatagaatttgtgtctcattaaatttcatatattttgttttattta 679

                                                                       
Query: 480 tttgcaagtttttataataaagtttagttattttaaatttgaaaaatatgaagaaagaga 539
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttgcaggtttttataataaagtttagttattttaaatttgaaaaatatgaagaaagaga 739

                                                                       
Query: 540 aactcttgtggaacctgacatatacattatttaaatcactatggaatttactcaaaaatt 599
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aactcttgtggaacctggcatatacattatttaaatcactatggaatttactcaaaaatt 799

                                                             
Query: 600 ggaaaacaaacttccatatggcctagctatagaatcttaattacatattc 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggaaaacaaacttccatatggcctagctatagaatcttaattacatattc 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)