Query= MSMg01no519_k01.b1 MSMg01no519_k01.b1 CHROMAT_FILE:
MSMg01no519_k01.b1 PHD_FILE: MSMg01no519_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:24 2005
(680 letters)
>mm_chr7_35919546_35920625
Length = 1080
Score = 936 bits (484), Expect = 0.0
Identities = 500/506 (98%), Gaps = 2/506 (0%)
Strand = Plus / Minus
Query: 4 ggaattcccaatagacaggcagggttcgcacagacaaaaggcatcactacatgcatttat 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaattcccaacagacaggcagggttcgcacagacaaaaggcatcactacatgcatttat 445
Query: 64 gatttgcctaattatctctgtcctccccgatactacagctccataaacttgtcacagttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatttgcctaattatctctgtcctccccgatactacagctccataaacttgtcacagttg 385
Query: 124 tgtttgtcgtttggcactagcttgctatgcgcacacatgtggatgtttgtttacagaatg 183
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtttgtcctttggcactaggttgctatgcgcacacatgtggatgtttgtttacagaatg 325
Query: 184 tggccagcagcagggccttcatgtgggctgacaacaccccgtttggctgccccaggggac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggccagcagcagggccttcatgtgggctgacaacaccccgtttggctgccccaggggac 265
Query: 244 tggccccccgccaggattcccagacagattactgatctcaattctctattcctccctgcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggccccccgccaggattcccagacagattactgatctcaattctctattcctccctg-- 207
Query: 304 ccccccaagcactagggatgaagcccaagaccctgaacaagctagaccagcactctacca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccccccaagcactagggatgaagcccaagaccctgaacaagctagaccagcactctacca 147
Query: 364 ctgagccacacccccagcccctcactgggggattctaggcaggtgctctaccactaagct 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctgagccacatccccagcccctcactgggggattctaggcaggtgctctaccactaagct 87
Query: 424 acatttcaagtcatgggagtctttaaggcaaacaaacagatatataaacaaaacagaaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 acatttcaagtcatgggagtctttaaggcaaacaaacagatatataaacaaaacagaaac 27
Query: 484 ccaaccaaccaatgaaacaacaatca 509
||||||||||||||||||||||||||
Sbjct: 26 ccaaccaaccaatgaaacaacaatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_k01.g1 MSMg01no519_k01.g1 CHROMAT_FILE:
MSMg01no519_k01.g1 PHD_FILE: MSMg01no519_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:24 2005
(600 letters)
>mm_chr7_35893235_35894234
Length = 1000
Score = 1004 bits (519), Expect = 0.0
Identities = 588/629 (93%), Gaps = 36/629 (5%)
Strand = Plus / Plus
Query: 1 cagaagcacactgttttatggggaatctgacacactctggttttccttaactgttactg- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cagaagcacactgttttatggggaatctgacacactctggttttccttaactgttactgg 238
Query: 60 --cac--------------c-----------t-tgggtgagattaaaaactatttaaaaa 91
||| | | |||||||||||||||||||||| |||
Sbjct: 239 tacacaatgtgtgtgtgtgcatatgtgttaatctgggtgagattaaaaactattt--aaa 296
Query: 92 aaaaaaagaaaaagaaaaagaaagagagaaaagaaaagaaaagattgtatttggaacgaa 151
|||||||| ||||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 297 aaaaaaag--aaagaaaaagaaa-a-ag-aaagaaaagaaaagattgcatttggaacgaa 351
Query: 152 tgcaaggtggattttctaatcagatatatttttacctggatgctaaaatatgcttgttga 211
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 352 tgcaaggtggattttctaatcagatatatttttacctggatgctaaaacatgcttgttga 411
Query: 212 aattccgtttttccaatgtcacccctacctgttgacagtgtcagctgggagttctaactt 271
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 412 aattcagtttttccaatgtcacccctacctgttgacagtgtcagatgggagttctaactt 471
Query: 272 ggtgtttgcttggtgcccatgatggtgcacagggatttaggccttggaagttatctggcc 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggtgtttgcttggtgcccatgatggtgcacagggatttaggccttggaagttatctggcc 531
Query: 332 aacaggcaacagggagtgtcacgagagtgggttatgtgcttttcagttgacctttgggtt 391
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aacaggcaacaggaagtgtcacgagagtgggttatgtgcttttcagttgacctttgggtt 591
Query: 392 tttgactgaaagcgctcaaatggagaccagcgggagaagtgggctaggccagtgtgccct 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tttgactgaaagcgctcaaatggagaccagcgggagaagtgggctaggccagtgtgccct 651
Query: 452 gcccatgctgcataaactgctaatcagtacagatgggaaaacccagctccacgctgggga 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gcccatgctgcataaactgctaatcagtacagatgggaaaacccagctccacgctgggga 711
Query: 512 acaggtttgtattcattccgtaaaagtgctctattgaagctgacagctctatggattttc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 acaggtttgtattcattccgtaaaagtgctctattgaagctgacagctctatggattttc 771
Query: 572 ctggggctgctgatgaagataaaagtcct 600
|||||||||||||||||||||||||||||
Sbjct: 772 ctggggctgctgatgaagataaaagtcct 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
