BAC Information

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BAC

Clone NameMSMg01-519K06
Chromosome7 (Build37)
Map Location 29,317,221 - 29,317,529
singlet/doubletsinglet
Overlap genenone
Upstream genePld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28
Downstream geneSycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519K06.T7 (MSMg01no519_k06.b1)MSMg01-519K06.TJ (MSMg01no519_k06.g1)
ACCAG590863AG590864
length727838
length of high quality
(start - end)
312 (61 - 372)---
definitionCHROMAT_FILE: MSMg01no519_k06.b1 PHD_FILE: MSMg01no519_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:25 2005CHROMAT_FILE: MSMg01no519_k06.g1 PHD_FILE: MSMg01no519_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCAGTTTTCAGAGAAGATCTCCTAGCCTCCCAAACTAAGAAACAAACTT
TTTTTTTTTCTTGCCTCTAGTTTTACTTCTCATCCAGTGCTGAGGAATGG
GCTGGACCCAAGGTAGCACACGTGCATTGTATTGTAAACCATTCTTTGTA
AACCACCCACTTTGGAACCACAGATAGTTGGAAGATGGCTTGAGACATTA
CTGCAGGCCCAAAACTACGGGGAGTTGCTACGGAAGAACACAGACACATG
CCAGAGTCATCCCCCAGACACACAGACTGGGCTCTGTGACCCAGATGTGG
CCTCACTCCGGACAGCTCATCAGCTCCAGCTGTTAACTGCTGCTGCCGTC
ACAAGTGGGGACAGATCCCATGATGTGGCTGTCAGAATCCCTTATGATAC
TCTCAGCCATTCTTTCATGTTCATGCCTTTCCCTCTCCCTCATCAATTGT
CGGTGTGTGTTTTTTTTTTTTCTCCGTGTGCGTTCTGCGTTTTTCGTTTA
ACCCTTTATTCTTCTGTTTTACCTCCGTGTCTTTTTCATAACAACTTTTT
TAAATGAATTTTCTATTATATTTGACTATATGTTTTAATTTATTTTAACA
TTTCTATGATTGTCCTTTATTCGTCCCCTTTCGCCTATTTCTTTATTATT
TATTTCCCTTCTTTCTTTTTTCCCTTT
AAAAAAAGAAAAAANGGAAAGATCTGTAAAAAAAGGGAAAGAAAAAGAAA
AAAAAAGAAAGCTCGGTTTTCGGGAGCAAAAAAAAGGGTAAAAAAAAAGG
GGGGGGGGGAGGGGNNATAAAAAAAGGGAGAGAACCACACGGGAGAGGAA
GAAAGAAGGAAGAGAGAAGAAAAACAAAAAGGGGAAGAACCAAAAAAAAA
AGGGGGGGAGGGTGGTTTTTTTTTTTTCCCCCCCCNCCCNCNCNNNNNAA
AAAAAAAAAAAAAAAAGAGAGGTGAACNACAATAAGNAAAAGGNTACTCC
AAAAAAAAAAAGAGTGGGTTTGGGGGNAAAGAAATTNAAAAAGAAACAGG
TTGAAAAAGGAAAAGGAAGCTTGGGAAAATCTGTTAAAAAAAACAAAAAT
GGTTTAAAAAAAAAAGGCTTGCCCCTGGAAAAAAAAAAAGGCCGGGGGGC
GGGGGGGGGAAGGGAAATTTAAAAAAAAAAAAAAAACCCTTTGGGGGGCC
CCAAAAAAAAAAAAAAGGGAAAAAAAAAACCCGGGGGGGGAAAAAGGAAA
AAAAAAAAAAAAGGGGAGAAGAAAAAAATAAAAAAAAAGGGCCCCAAAAA
AAGAAAAAAAAAGAAAAAAGGGGGGGGGGGGGAGGGAAAAAAAAAAAAAA
AAAAATCTATAAAAAAAAAAAAAGAACAAAAAAAAAAACAATTTTATTTA
GAAAAAAAAAAGAAAAGAAAGAAAGGGGGAAAAAAAAAAAGGAGAAAAAA
AAAAAAAAATGATGAAAAAAAAAAAAAGAAAGGCGCCGAGAAAAAGAGGA
AGAAAGAAAAAAAAAGAGAAAAGCAGGGAGAAAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_k06.b1 MSMg01no519_k06.b1 CHROMAT_FILE:
MSMg01no519_k06.b1 PHD_FILE: MSMg01no519_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:25 2005
         (312 letters)



>mm_chr7_29317021_29317731
          Length = 711

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaagatctcctagcctcccaaactaagaaacaaactttttttttttcttgcctctag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 509 agagaagatctcctagcctcccaaactaagaaacaaac-ttttttttttcttgcctctag 451

                                                                       
Query: 61  ttttacttctcatccagtgctgaggaatgggctggacccaaggtagcacacgtgcattgt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 450 ttttacttctcatccagtgctgaggagtgggctggacccaaggtagcacacgtgcattgt 391

                                                                       
Query: 121 attgtaaaccattctttgtaaaccacccactttggaaccacagatagttggaagatggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 attgtaaaccattctttgtaaaccacccactttggaaccacagatagttggaagatggct 331

                                                                       
Query: 181 tgagacattactgcaggcccaaaactacggggagttgctacggaagaacacagacacatg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgagacattgctgcaggcccaaaactacggggagttgctacggaagaacacagacacatg 271

                                                                       
Query: 241 ccagagtcatcccccagacacacagactgggctctgtgacccagatgtggcctcactccg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccggagtcatcccccagacacacagactgggctctgtgacccagatgtggcctcactccg 211

                     
Query: 301 gacagctcat 310
           ||||||||||
Sbjct: 210 gacagctcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)