Query= MSMg01no519_l12.b1 MSMg01no519_l12.b1 CHROMAT_FILE:
MSMg01no519_l12.b1 PHD_FILE: MSMg01no519_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:31 2005
(625 letters)
>mm_chr7_48172730_48173754
Length = 1025
Score = 1067 bits (552), Expect = 0.0
Identities = 603/620 (97%)
Strand = Plus / Plus
Query: 5 gaattctctctatcggtagggtaaatttctaagcactaagaatgatttgggtgcctatta 64
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcaaagggtagggtaaatttctaagcactaagaatgatttgggtgcctatta 264
Query: 65 gcactgtatggccccaaagattatcaaaccaaaacagatagggtgtaggatctccccaga 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcattgtatggccccaaagattatcaaaccaaaacagatagggtgtaggatctccccaga 324
Query: 125 tgaggactggcccctacacagaaaggcagcccccacacactcagctgctgagctgttgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 tgaggactggcccctacacagaaaggcagcccccacacactcagctgctgagctgctgag 384
Query: 185 ccactgcccatagccacctggctatgaagaatgtgaccattttgaaataaatagtctgtc 244
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 385 ccactgcccatagccacctggctatgaagaacgtgaccattttgaaataaatagtctggc 444
Query: 245 aaagacccaccaactgagttggtcattcaagaaagtattatacgaaagtgtgaaaatgtc 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 aaagacccaccaactgagttggtcattcaagaaagtgttatacgaaagtgtgaaaatgtc 504
Query: 305 acagtgcagccagaatgattggctcagtgatagagtccaccagtgaaagaggggctgggg 364
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 acaatgcagccagaatgattggctcagtgatagactccaccagtgaaagaggggctgggg 564
Query: 365 tgtggtttaatggatacagcacctacctagaagccccagtgaggggctggggagtgtggt 424
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggggtttaatggatacagcacctacctagaagccccagtgaggggctggggagtgtggt 624
Query: 425 tcagtgctagtgctcctgccttgaatccctagccaggggctggaagtttagtttaatggt 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 tcagtgctagtgctcctgccttgaatcactagccaggggctggaagtttagtttaatggt 684
Query: 485 agagtactcgcctagaatgcactagtgagggtctatgtgtggctcaatggtagagcagct 544
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 685 agagcactcgcctagaatgcactagtgaggggctatgtgtggctcagtggtagagcagct 744
Query: 545 gcctagaatccccagtaaggagctaaggtgtgactcagtggtagagcccctgcctagaat 604
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcctagaatccccagtaaggggctaaggtgtgactcagtggtagagcccctgcctagaat 804
Query: 605 cccccagtgaggggctaaga 624
||||||||||||| ||||||
Sbjct: 805 cccccagtgagggactaaga 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_l12.g1 MSMg01no519_l12.g1 CHROMAT_FILE:
MSMg01no519_l12.g1 PHD_FILE: MSMg01no519_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:31 2005
(374 letters)
>mm_chr7_39314102_39314876
Length = 775
Score = 253 bits (131), Expect = 1e-71
Identities = 295/383 (77%), Gaps = 62/383 (16%)
Strand = Plus / Plus
Query: 1 tgggtttctgccaagcttgagtctgaa-acccacataaatagag-gggagaggagaaaga 58
||||||||||||| |||||||||| || |||||||||||||||| |||||||||||||||
Sbjct: 201 tgggtttctgccatgcttgagtct-aagacccacataaatagagagggagaggagaaaga 259
Query: 59 aagaggtggaaaaagaaagaagtccttaattggtacaggttgttgggttacatgaaaaaa 118
||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct: 260 aagaggtggaaaaagaaagaagtccttaattggtacaagatgttgggttacattaaaaaa 319
Query: 119 ataaaaaccaccaattttaattccacttttgagtgagattccacaggtatttttgttcat 178
|| || ||||||||||||| ||
Sbjct: 320 at------------------------------gt----------aggtatttttgtttat 339
Query: 179 ttgtgattaaaggactaatcttttccctttttttggtgtatcctcacaaacctgaatg-- 236
|||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 340 ttgtgaataaaggaccaattttttccctttttt-ggtgtatcctcacaaacctgaatggg 398
Query: 237 tttttttttttttgacctttttt-agacgtatatgcaagtctcgtgtctttctttctttc 295
||||| ||||||||| ||| ||||||||| |||||| ||| ||| ||| ||
Sbjct: 399 ttttta--------acctttttttagaaatatatgcaaatctcgtctctctctctctctc 450
Query: 296 tttctttctttctttct-t-tctttctctctctctctctctctctctct-----ctctct 348
| ||| ||| ||| ||| | ||||| |||||||||||||||||||| || ||| ||
Sbjct: 451 tctctctctctctctctctctctttttctctctctctctctctctcccttccccctccct 510
Query: 349 ctctctctctctctctctctctc 371
| ||||||| ||| |||||||||
Sbjct: 511 ccctctctccctccctctctctc 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 120
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space: 279590
Effective search space used: 279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
