Query= MSMg01no520_b16.b1 MSMg01no520_b16.b1 CHROMAT_FILE:
MSMg01no520_b16.b1 PHD_FILE: MSMg01no520_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:02 2005
(683 letters)
>mm_chr7_115621449_115622531
Length = 1083
Score = 1239 bits (641), Expect = 0.0
Identities = 675/691 (97%), Gaps = 12/691 (1%)
Strand = Plus / Plus
Query: 5 gaattctatccctatgttaagaaaaaaaaa-gtatacttgctgtctcctaagaagcacag 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 200 gaattctatccctatgttaagaaaaaaaaaagtatacttgctgtctcctaagaagcacag 259
Query: 64 ggttgtgatcatgggatactgattcataagataatcaaaagaaacctggagtaaataagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggttgtgatcatgggatactgattcataagataatcaaaagaaacctggagtaaataagt 319
Query: 124 ggaagagag----gtacaattaaagactggacttgtgttatacagaatataagctatcca 179
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaagagagagaggtacaattaaagactggacttgtgttatacagaatataagctatcca 379
Query: 180 gagaattttttaggataaaaaagagagaaatggaaattctgaagccaccaggttcacagg 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 gagaattttttaggataaaaaagagagaactggaaattctgaagccaccaggttcacagg 439
Query: 240 tcctcaattgtgccctggagcatatcttctgctctagaccctctccaccttgcccaaaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcctcaattgtgccctggagcatatcttctgctctagaccctctccaccttgcccaaaac 499
Query: 300 cagagacagcctgatccccaaaggagttctgggagaatcacaatccctgatctcaagctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagagacagcctgatccccaaaggagttctgggagaatcacaatccctgatctcaagctg 559
Query: 360 tattgcagagcaatagttataaaaactacaaggtacggagacaggttgatcaatgaaata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 560 tattgcagagcaatagttataaaaactacaaggtacggagacaggttgatcaatggaata 619
Query: 420 tagttaaagacccagaaataaacccatatacctgtggtcacctgatctttgacaaagaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagttaaagacccagaaataaacccatatacctgtggtcacctgatctttgacaaagaag 679
Query: 480 ccaataaaacccagtgagaaaaagtattttaaacaaatggtgcaggatcaactagtggtc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccaataaaacccagtgagaaaaagtattttaaacaaatggtgcaggatcaactagtggtc 739
Query: 540 agaatgcagaagaacaccaattgattcattcttatctccttgtacaaagctcaagtccag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agaatgcagaagaacaccaattgattcattcttatctccttgtacaaagctcaagtccag 799
Query: 600 gtggatcaagaacttccacataaaaccagatacactgaaactaatagaagagaaagtggg 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gtggatcaagaacctccacataaaaccagatacactgaaactaatagaagagaaagtggg 859
Query: 660 gaaga-g--cc----tcaaacacgttggcaa 683
||| | | || ||||||||||||||||
Sbjct: 860 gaacacgttccccactcaaacacgttggcaa 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_b16.g1 MSMg01no520_b16.g1 CHROMAT_FILE:
MSMg01no520_b16.g1 PHD_FILE: MSMg01no520_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:02 2005
(487 letters)
>mm_chr7_115825992_115826882
Length = 891
Score = 849 bits (439), Expect = 0.0
Identities = 463/473 (97%), Gaps = 4/473 (0%)
Strand = Plus / Minus
Query: 3 gactgagtctggaagccctccatatgtcttgcccttgggtcagtctgctatagcttaaac 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gactgagcctggaagccctccatatgtcttgcccttgggtcagtctgctatagcttaaac 595
Query: 63 ttcccccttcccc----ctctcatttgtggtcttgttcagctggtttgcctgtaaagcaa 118
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttcccccttccccctctctctcatttgtggtcttgttcagctggtttgcctgtaaagcaa 535
Query: 119 gttcggctctgcccctgccagggaccctacttgctgctagtctccttctgctacttagct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gttcggctctgcccctgccagggaccctacttgctgctagtctccttctgctacttagct 475
Query: 179 acctccccgccccttgtgtccttgtgtcctgccagaggttccgtctgttagaacttgctt 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 474 acctccccgccccttgtgtccttgtgtcctgccagaggttccctctgttagaacttgctt 415
Query: 239 tcccacacacttgaccacctgtgcattgagttcacgctagctagtgaagggcttgttttc 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 414 tcccacacacttgaccacctgtgcactgagttcacgctagctagtgaagggcttggtttc 355
Query: 299 cctctcccgcacatgtgatagagccccttcctcccttctttccctctctctgcctgagac 358
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cctctcccgaacatgtgatagagccccttcctcccttctttccctctctctgcctgagac 295
Query: 359 ttggaggcacactactttgggcctttactttgcccagtccaccacaggctgtgacttcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttggaggcacactactttgggcctttactttgcccagtccaccacaggctgtgacttcca 235
Query: 419 actgctggtaggaagtcccaccccatgcatgctgagggggagggggaggggga 471
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 234 actgctggtaggaagtcccaccccatgcatgcggagggggagggggaggggga 182
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 891
Length adjustment: 10
Effective length of query: 477
Effective length of database: 881
Effective search space: 420237
Effective search space used: 420237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
