BAC Information

Click to search

BAC

Clone NameMSMg01-520B21
Chromosome7 (Build37)
Map Location 16,861,071 - 16,861,741
singlet/doubletsinglet
Overlap geneCcdc9
Upstream geneEG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik
Downstream geneBbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520B21.T7 (MSMg01no520_b21.b1)MSMg01-520B21.TJ (MSMg01no520_b21.g1)
ACCAG591228AG591229
length754749
length of high quality
(start - end)		479 (50 - 528)672 (78 - 749)
definitionCHROMAT_FILE: MSMg01no520_b21.b1 PHD_FILE: MSMg01no520_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:03 2005CHROMAT_FILE: MSMg01no520_b21.g1 PHD_FILE: MSMg01no520_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGATCTGCCT
TCCTCTGCCTCCCGAGTGCTGGGATTAAAGAGTGAGTTCCAGGACAGCCA
GGGCTATATAGAGAAGCCTTGTCTCGAAAAACAAAAACAAAAACAAAAAC
AAACAAACAAACAAACAAACAAACAAACAAACAAACAAAGAGTTCAAAGC
TGGGGTTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAG
AGGTCCTGAGTTCAATTCTCAGCAACCACCTGGTGGCTCACAACCATCTC
TAATGGGATCTGATGCCCTCTTCTGGTGTGTGTTTGAAGACAGCTACAGT
GCACTCACATAAATAAAATTAATAAATAAATCTTTAAAAAAAAGAGATAG
AGAGAGTTCAAAGCTGGGGCTGGCGAGATGGCTCAACGGTTAAGAGCACC
GACTGGCTCACATCCCTTTTTCATTGCAGCATATACCAGGCTGGGGGAGT
CTGTCTTTGCTTCCTATCTCTAGGAGTGAGTGCCGGGATTGAAGACATGC
TGACTACTCAATTCTGGCTTTCTGAACAACCAAATTTATATCCTCACATT
TTGCCCTCACTGGTTGGACTTGGAGCTGCTATGTAAATCATCCTAAACTC
TACTCATTAATCCACCTGTCTCTGTCCTCTAATTGCTAGTATTAAAAGAA
GAAT

NNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCATCTCCTCACCCCAGTC
AGACACAGGCTGGTGGTCCTCAGAGGGTGAGAAGGGGATGGGAGGTTCAA
CAGGGACTGGGGACAGCAACTCCTGGGACCCGGCAGGCACAGGGTCCACC
TGCTCACAGGTGGGCTTCCCAGCAGGCTCAGCTTCAGGCTGGTGATCAGG
AACAGTTGCTGCTTCCTGGTCCTTAGGACCCTCTTCATCCTCTTCAAACT
CTTCTTCCTCTTCCTCCTCCTCCTCAGTAACATCTTCACTCACGTCCTCC
CACTCTTCATCCTCCTCATCTTCCCCCTCTTCTTCTCCCTCCTCCTCTTC
CCCCACATCTTCCTCACCATCTTCCTCGGGAGGCCGATGAGCTGGAGCTG
GGGTCTCAGAAGCCTGCTGGGAACACAGGCAGATCAAGGAAGTGCTTGGG
ACCTGTCACCCCACAAAGCCCCATGCACACGCCCTACCTCATACCTGCTC
TGCCTTACCTGTGTGGGTGTCTCCTCCAGGGATATGGACTGAGAGGACTC
GGGGGCCGAGGACACAGCTTCCTCTCTTGTCTCCCAGCGATTATCGTGGT
CACTGGAGTGGACAGAGCAAAGGGGTGAGGGATGGGATGTACTTCTCTTC
AGAGAACATCTGGCATGTTGCACTGAGGGCAAAGGGGGCAGGAGACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_b21.g1 MSMg01no520_b21.g1 CHROMAT_FILE:
MSMg01no520_b21.g1 PHD_FILE: MSMg01no520_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:04 2005
         (672 letters)



>mm_chr7_16860871_16861942
          Length = 1072

 Score = 1292 bits (668), Expect = 0.0
 Identities = 671/672 (99%), Gaps = 1/672 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccatctcctcaccccagtcagacacaggctggtggtcctcagagggtgagaagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccatctcctcaccccagtcagacacaggctggtggtcctcagagggtgagaagggg 260

                                                                       
Query: 61  atgggaggttcaacagggactggggacagcaactcctgggacccggcaggcacagggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggaggttcaacagggactggggacagcaactcctgggacccggcaggcacagggtcc 320

                                                                       
Query: 121 acctgctcacaggtgggcttcccagcaggctcagcttcaggctggtgatcaggaacagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgctcacaggtgggcttcccagcaggctcagcttcaggctggtgatcaggaacagtt 380

                                                                       
Query: 181 gctgcttcctggtccttaggaccctcttcatcctcttcaaactcttcttcctcttcctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgcttcctggtccttaggaccctcttcatcctcttcaaactcttcttcctcttcctcc 440

                                                                       
Query: 241 tcctcctcagtaacatcttcactcacgtcctcccactcttcatcctcctcatcttccccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctcctcagtaacatcttcactcacgtcctcccactcttcatcctcctcatcttccccc 500

                                                                       
Query: 301 tcttcttctccctcctcctcttcccccacatcttcctcaccatcttcctcgggaggccga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcttctccctcctcctcttcccccacatcttcctcaccatcttcctcgggaggccga 560

                                                                       
Query: 361 tgagctggagctggggtctcagaagcctgctgggaacacaggcagatcaaggaagtgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagctggagctggggtctcagaagcctgctgggaacacaggcagatcaaggaagtgctt 620

                                                                       
Query: 421 gggacctgtcaccccacaaagccccatgcacacgccctacctcatacctgctctgcctta 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggacctgtcaccc-acaaagccccatgcacacgccctacctcatacctgctctgcctta 679

                                                                       
Query: 481 cctgtgtgggtgtctcctccagggatatggactgagaggactcgggggccgaggacacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctgtgtgggtgtctcctccagggatatggactgagaggactcgggggccgaggacacag 739

                                                                       
Query: 541 cttcctctcttgtctcccagcgattatcgtggtcactggagtggacagagcaaaggggtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttcctctcttgtctcccagcgattatcgtggtcactggagtggacagagcaaaggggtg 799

                                                                       
Query: 601 agggatgggatgtacttctcttcagagaacatctggcatgttgcactgagggcaaagggg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agggatgggatgtacttctcttcagagaacatctggcatgttgcactgagggcaaagggg 859

                       
Query: 661 gcaggagacaca 672
           ||||||||||||
Sbjct: 860 gcaggagacaca 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |