BAC Information

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BAC

Clone NameMSMg01-520D08
Chromosome7 (Build37)
Map Location 134,886,521 - 134,887,172
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2
Downstream geneFbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520D08.T7 (MSMg01no520_d08.b1)MSMg01-520D08.TJ (MSMg01no520_d08.g1)
ACCAG591296AG591297
length787768
length of high quality
(start - end)		654 (47 - 700)615 (77 - 691)
definitionCHROMAT_FILE: MSMg01no520_d08.b1 PHD_FILE: MSMg01no520_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:11 2005CHROMAT_FILE: MSMg01no520_d08.g1 PHD_FILE: MSMg01no520_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGACATTGAGGGATATACAGAAAAACCCTATCTGGGAAAAAA
CAAAAACAAAACAAAACCAAAAAACATCCCACCACCACCACCAACAACAA
CAACAAAAGAAGATGGGCTTGAGAGAGTGAACACACAAAGAAAGATTTTT
AGTTTGTATTCTACCTCAAGCAGTGACTGTGTCTTTTTCCCATTGATTGG
GGCCTGGCCTCACAATCTTATTCAGCTGGCTAGTCTGAAAAGAATTGGTG
CACCGGAAATGGAGGAGGAAAGGGCAAAGCAGTCACTGTCCCAGGCCATC
AAATCCCTAGAATAGAGTAGTGGGCCTCTGTGTAGACAAAGGTTTGACAG
GGTGGGAAGGAATGAAACATTTGCATAAAAGTCTGACAAAAAGGAAGAAA
TGTAAAAGATTTTAAGTCCTTCTCCAGAACACACATTTTTATCGTGTTTG
ATACAGAAAGGAAAACTCACAGTTGATATTTTTTTACACTCAGTTATACA
CAACAGATAAATGATAGAGCCAGAATTTAAACTCAAGTCCAGAGCCCAGG
TTGAGAACTTCTGTAACATTTATAGACTAATCAAAATCCAGTTATGTGCA
TTTAACATGAGCACAGCAAAATTAGCATATAAAGTTAGACTTCTAATGTA
TCTTCAAAAATTCTAAAGTCAGGCTGGAGAGATGGCTCAAACGTTAGGAG
CACTGGCTGCTCTTTTGGAAGTCTTGAATTTATTCCC

NACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCTCTGATCTTTAAGTCATT
GTTCCTTCTCATATTCTTTCTTTCTTCCTCCCTTGCTCCCTCTGTCTGTC
CATCCTTCTCACTTCCCTTCCCCCCCCACACACCCCCAACCCCTACTCCA
ACCCCACCTCTGCCAAGGGTCTTGCTATGTACCTTTGGTTAGCCTGGAAC
TTACTACATAACATAGATTGGCTGTAAGTTTATGATCCTTCTACCTCAGT
TTGCCTTCTGTGGTTTATGACCTCTACTAATATGCCTATCTTTGTACCTT
CCATGTTTATTTGGTCATTTGTATGCTATTTGAAGAAATGTCTATTCAGA
TTATTTACCATTTTAAATTACTTTTGCGGCCCACCACTTTTCTCTGGGTG
CTAGAGATCAAAACCAGGCTCTGTGTTTGCCAAATGCTGAGGTTTTTTTG
AAGTACACTATCACTGTCTTCAGACACACCAGAAGAGGGCGACAGATCCC
ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGG
ACCCCTGGAAGAGCAGTCAGTGCTCTTAACCATTAAGCCATCTCTCCAGT
CCCCAAATACTGAGTTTTAAGAACTTCTTTTTCTTTTAATGTTATTTAAT
ATTTTGGAATTTTCTGTAATATATTTTGATCATGGTCTTTGCCTTCCCCC
CAACTCTCCTTCATATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_d08.b1 MSMg01no520_d08.b1 CHROMAT_FILE:
MSMg01no520_d08.b1 PHD_FILE: MSMg01no520_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:11 2005
         (654 letters)



>mm_chr7_134886419_134887473
          Length = 1055

 Score = 1158 bits (599), Expect = 0.0
 Identities = 638/657 (97%), Gaps = 12/657 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacattgagggatatacagaaaaaccctatct-gggaaaaaacaaaaacaa 63
           ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 754 gaattccaggacattgagggatatacagagaaaccctatctcgggaaaaaacaaaaacaa 695

                                                                       
Query: 64  aacaaaaccaaaaaacatc------ccaccaccaccaccaacaacaacaacaaaagaaga 117
           |||||||||||||||||||      |||||||||||||||||||||||||||||||||||
Sbjct: 694 aacaaaaccaaaaaacatcccaccaccaccaccaccaccaacaacaacaacaaaagaaga 635

                                                                       
Query: 118 tgggcttgagagagtgaacacacaaagaaagatttttagtttgtattctacctcaagcag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 634 tgggcttgagagagtgaacacacaaagaaagatttttagtttgtattctacctcaggcag 575

                                                                       
Query: 178 tgactgtgtctttttcccattgattggggcctggcctcacaatcttattcagctggctag 237
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgactgtgtctttttcccattggttggggcctggcctcacaatcttattcagctggctag 515

                                                                       
Query: 238 tctgaaaagaattggtgcaccggaaatggaggaggaaagggcaaagcagtcactgtccca 297
           ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||
Sbjct: 514 tctgaaaagaattggtgcaccggaaatggagg-----agggcaaagcagtcactgtccca 460

                                                                       
Query: 298 ggccatcaaatccctagaatagagtagtgggcctctgtgtagacaaaggtttgacagggt 357
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 459 ggccatcaaatccctagaatagagtagtgggcctctgtgcagacaaaggtttgacagggt 400

                                                                       
Query: 358 gggaaggaatgaaacatttgcataaaagtctgacaaaaaggaagaaatgtaaaagatttt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gggaaggaatgaaacatttgcataaaagtctgacaaaaaggaagaaatgtaaaagatttt 340

                                                                       
Query: 418 aagtccttctccagaacacacatttttatcgtgtttgatacagaaaggaaaactcacagt 477
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 339 aagtccttctccaggacacacatttttatcgtgtgtgatacagaaaggaaaactcacagt 280

                                                                       
Query: 478 tgatatttttttacactcagttatacacaacagataaatgatagagccagaatttaaact 537
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgatatttttttacactcagctatacacaacagataaatgatagagccagaatttaaact 220

                                                                       
Query: 538 caagtccagagcccaggttgagaacttctgtaacatttatagactaatcaaaatccagtt 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 caagtccagagcccaggttgagaacttctgtaacatttatagactaatcaaaatccagtt 160

                                                                    
Query: 598 atgtgcatttaacatgagcacagcaaaattagcatataaagttagacttctaatgta 654
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 atgtgcatttaacatgagcacagcaaaattagcatataaagttagacttctaatgta 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space:   672980
Effective search space used:   672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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