Query= MSMg01no520_g10.b1 MSMg01no520_g10.b1 CHROMAT_FILE:
MSMg01no520_g10.b1 PHD_FILE: MSMg01no520_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:26 2005
(626 letters)
>mm_chr7_103812067_103813092
Length = 1026
Score = 803 bits (415), Expect = 0.0
Identities = 570/647 (88%), Gaps = 45/647 (6%)
Strand = Plus / Plus
Query: 5 gaattctccctttt-ttcttgcatctgggttttcttgttttatttt----------tggt 53
|||||||||||||| || |||| ||||||||||||||||||||||| ||||
Sbjct: 180 gaattctcccttttatttttgcgtctgggttttcttgttttattttgttttgtttttggt 239
Query: 54 tgttgttt--------------gtttgtttgtttgagccgttaccacaaaatgggtcagt 99
|||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 240 tgttgtttttcttcgtttgtttgtttgtttgtttgagccgttactacaaaatgggtcagt 299
Query: 100 ttggagatcactgagcctatgactgttgatccgtgcttaatgccaggttccagaagagat 159
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 300 ttggagatcactgagcctatgcctgttaatccgtgcttaatgccaggttccagaagagat 359
Query: 160 ccaaagacacatgagacacagatgcggacagcaaggcagatgattcagaggtgggaagcg 219
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 360 ccaaagacacatgagacacagatggggacagcaaggcagatgattcagaggtgggaagcg 419
Query: 220 aagagagagagctatgtgcaaatatctgaacattgtcactgagggacactgggtaaaatg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagagagagagctatgtgcaaatatctgaacattgtcactgagggacactgggtaaaatg 479
Query: 280 tatcgagaaattctacatatatacatatacatacatatatatatatatatatatatatat 339
||||||||||||||||| | | ||| | ||| |||||| ||| | | | | | | | |
Sbjct: 480 tatcgagaaattctacacacacacacacaca--catatacatacacacacacacacacac 537
Query: 340 atatatatatatatatacacacacacacatatacacacaccacacaaaaccttttggtga 399
| | | | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 538 acacaca----------cacacacacacacatacacacaccacacaaaaccttttggtga 587
Query: 400 acctaagattatttttacatcaataaatctatgctgaaagctagcatgcgtggtcataaa 459
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 588 acctaagattatttttacatcaataaatctatgctgaaacctagcatgcgtggtcataaa 647
Query: 460 cgagaggacagcaggagacaacagtagcccaagatggtaattatttcgaggtgtgttggg 519
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 648 cgagaggacagcaggagacaacagtagcccaagatggttattattttgaggtgtgttggg 707
Query: 520 aagcagcagcctcggtatcaggctggagagcctctgctgtattctgggacagtggtgtcg 579
||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct: 708 aagcagc---ctcagtatcaggctggggagcctctgctgtattctgggacagtgatgttg 764
Query: 580 tcacagggaagttgttgattaaaagtgaagtggagtcaggtttcctt 626
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 765 tcacagggaagttgttgattaaaagtg-----gagtcaggtttcctt 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_g10.g1 MSMg01no520_g10.g1 CHROMAT_FILE:
MSMg01no520_g10.g1 PHD_FILE: MSMg01no520_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:26 2005
(662 letters)
>mm_chr7_103985692_103986754
Length = 1063
Score = 1197 bits (619), Expect = 0.0
Identities = 652/663 (98%), Gaps = 1/663 (0%)
Strand = Plus / Minus
Query: 1 ttgtgtggcaggaaacaatggtttattagacaggaactatagctaggtgcttccttagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttgtgtggcaggaaacaatggtttattagacaggaactatagctaggtgcttccttagcc 804
Query: 61 actgtactgtcctatccattcctagtgtatgaggtagatggtcttagaatcaggcttcag 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 803 actgtactgtcctatccattcctagtgtatgaggtagatggtattagaatcatgcttcag 744
Query: 121 atgaagaggcaatatttgtccaaggatac-ttaatcacacggagggggtaggtctagggc 179
|||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||
Sbjct: 743 atgaagaggcaatatttgtccaagcatactttagtcacacggtgggggtaggtctagggc 684
Query: 180 cattccttaaaggaaaccttagctttactacatgctgttgatggttctcagggaaagtaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cattccttaaaggaaaccttagctttactacatgctgttgatggttctcagggaaagtaa 624
Query: 240 aaggatagaattctgctatcccctaaatggcttctatgggagccacttctaagcaactga 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaggatagaattctgctatcgcctaaatggcttctatgggagccacttctaagcaactga 564
Query: 300 aaggtagaaaccgaatggttagattccaaggagccatcttatccattataaagtagattc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaggtagaaaccgaatggttagattccaaggagccatcttatccattataaagtagattc 504
Query: 360 acgagagtatttccatgagtcactgggcagcataatatggataaggaaccctctgtttat 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acgagagtatttccacgagtcactgggcagcataatatggataaggaaccctctgtttat 444
Query: 420 gtgaaatcctcatgagaagaaggtgttacatctacagtcaaagggacagaggccggaggc 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 gtgaaatcctcatgagaagaaggtgtcacatctacagtcaaagggacagaggccggaggc 384
Query: 480 aggtgcaggtcatgagacagtaggtggctgagcggggtgttaaaatataggctgtctggg 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggtgcaggtcaggagacagtaggtggctgagcggggtgttaaaatataggctgtctggg 324
Query: 540 tccaggtctgaccctctgtccacataatcgatccagggcagttatgctgcaagactacag 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 tccaggtctgaccctctgtccacataatcgatccagggcagctatgctgcaagactacag 264
Query: 600 ctcctaactctcaggcctaattctccctggcccacaaagggtctcctacctgccatcttg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcctaactctcaggcctaattctccctggcccacaaagggtctcctacctgccatcttg 204
Query: 660 cct 662
|||
Sbjct: 203 cct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space: 686556
Effective search space used: 686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
