BAC Information

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BAC

Clone NameMSMg01-520J13
Chromosome7 (Build37)
Map Location 86,562,302 - 86,601,447
singlet/doubletdoublet
Overlap geneBC025462, Polg
Upstream geneNtrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1
Downstream geneAI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520J13.T7 (MSMg01no520_j13.b1)MSMg01-520J13.TJ (MSMg01no520_j13.g1)
ACCAG591591AG591592
length765756
length of high quality
(start - end)		690 (45 - 734)683 (74 - 756)
definitionCHROMAT_FILE: MSMg01no520_j13.b1 PHD_FILE: MSMg01no520_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:41 2005CHROMAT_FILE: MSMg01no520_j13.g1 PHD_FILE: MSMg01no520_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,562,302 - 86,562,702)(86,600,766 - 86,601,447)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCAGTTGGGCTGGAGAGATGATTGCCAGAAGTCCTGAGTTCAAT
TCCCAGCAACCACATGGTGGCTCACAGCCATGTATGATGAGATCTGCTGT
CTTCTGTCCTGCAGGCATACACTCAGACAAAATGCATAATATACATAATA
TACATGATAAAATAAAATTTAAAAAGAGAATTCTGTCAAATATCAGTGCA
TGCAAAGAGGGTCTGAGTTAAGTAAGAGTGTGTGGTGGGTATTTACTAAG
CTCTGTCAACTATAAAGTCCTGAGTGTGTGGGGGTATTTACTAAGCTCTC
TCAACTGTAAAGCCCTGAGTGTGTGGTGGGTATTTACTAAGCTCTCTCAG
CTGTAAAGCCCTGAGTGTGTGGTGGGTATTTACTAAGCTCTCTCAGCTGT
AAAGCCCTGAGTGTGTGGGGGTATTTACTAAGCTCTCTCAGCTGTAAAGC
CCTGAGTGTGTGGTGGGTATTTACTAAGCTCTCTCAGCTGTAAAGCCCTG
GGTGTGTGGTGGGTATTTACTAAGCTCTCTCAGCTGTAAAGCCCTGGGTG
TGTGGTGGGTATTTACTAAGCTCTCTCAGCTGTAAAGCCCTGAGTGTGTG
GTGGGTATTTACTAAGCTCTCTCAACTGTAAAGCCCTGGGTGTGTGGTGG
GTATTTACTAAGCTCTCTCAGCTGTAAAGCCCTGAGTGTGTGGTGGGTAT
TTACTAAGATCTTTC

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGCCTACAGCTGCCTACCTCTCACAC
CCCGATTCCTGGGCCCATCTAGGTAGAAGAATTGGGCTGCTTAGACGTAG
AGGCTGAGGCCAAGATGGAGAATTCAGGGCTGAGCCAACCTCTAGTTCTG
GTGAGCAAGACACCTACCTGCTTGGGCTCTCTGGGTGGGTAGTGGACAGT
TGGGACTTCCCACCAGAGTTCACTAGGTTTTGGGAGACTTGGAGATGCTG
CCCTATTCCCCTGTGGTTCTTAACTGTAGGGGACCAAGGAGGGAACCTGT
GACCATGCTCTCCTGTCACTTTGCAATTTGCCTGCTCAGTTTCAGGCCCT
TTCCCCACCCCCACCTCCCCTACCCGCTGGCCCTTGCTGAATGCAGGTGC
TGGAGCAGGGCCTGATCTGGGTGTGTGGCCCCACAGCCTGCTGCTTGTGC
CCCCAAATCCAGCCAGCCCACGTATCACCATGGCAACGGACCTTATAATG
ATGTGAATATCCCTGGTTGCTGGTTTTTCAAGCTGCCTCACAAGGTATGG
TTTGTGGCTGCCTCATGTTCTCACTGTGATTCTGACCCACAGTAGGACTT
CATGCTTACTCAGACCAGGGAACTGCTTTTTGTGGGATTGACAGTCATAG
AGGCTCCTAAATCATATGATTTAGGGCAATTTTCATGTCTTACTGCTTTT
GATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_j13.b1 MSMg01no520_j13.b1 CHROMAT_FILE:
MSMg01no520_j13.b1 PHD_FILE: MSMg01no520_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:41 2005
         (690 letters)



>mm_chr7_86562099_86563188
          Length = 1090

 Score =  729 bits (377), Expect = 0.0
 Identities = 395/401 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctcagttgggctggagagatgattgccagaagtcctgagttcaattcccagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggaattctctcagttgggctggagagatgattgccagaagtcctgagttcagttcccagc 263

                                                                       
Query: 64  aaccacatggtggctcacagccatgtatgatgagatctgctgtcttctgtcctgcaggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaccacatggtggctcacagccatgtatgatgagatctgctgtcttctgtcctgcaggca 323

                                                                       
Query: 124 tacactcagacaaaatgcataatatacataatatacatgataaaataaaatttaaaaaga 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 tacactcagacaaaatgcataatatacataatatacataataaaataaaatttaaaaaga 383

                                                                       
Query: 184 gaattctgtcaaatatcagtgcatgcaaagagggtctgagttaagtaagagtgtgtggtg 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taattctgtcaaatatcagtgcatgcaaagagggtctgagttaagtaagagtgtgtggtg 443

                                                                       
Query: 244 ggtatttactaagctctgtcaactataaagtcctgagtgtgtgggggtatttactaagct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtatttactaagctctgtcaactataaagtcctgagtgtgtgggggtatttactaagct 503

                                                                       
Query: 304 ctctcaactgtaaagccctgagtgtgtggtgggtatttactaagctctctcagctgtaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctcaactgtaaagccctgagtgtgtggtgggtatttactaagctctctcagctgtaaa 563

                                                    
Query: 364 gccctgagtgtgtggtgggtatttactaagctctctcagct 404
           |||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 564 gccctgggtgtgtggtgggtatttactaagatctttcagct 604



 Score =  255 bits (132), Expect = 7e-72
 Identities = 162/172 (94%), Gaps = 1/172 (0%)
 Strand = Plus / Plus

                                                                       
Query: 508 gtgtgtggtgggtatttactaagctctctcagctgtaaagccctgggtgtgtggtgggta 567
           ||||||||||||||||||||||||||| ||| || ||||| |||| |||||||| |||||
Sbjct: 434 gtgtgtggtgggtatttactaagctctgtcaactataaagtcctgagtgtgtgg-gggta 492

                                                                       
Query: 568 tttactaagctctctcagctgtaaagccctgagtgtgtggtgggtatttactaagctctc 627
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttactaagctctctcaactgtaaagccctgagtgtgtggtgggtatttactaagctctc 552

                                                               
Query: 628 tcaactgtaaagccctgggtgtgtggtgggtatttactaagctctctcagct 679
           ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 553 tcagctgtaaagccctgggtgtgtggtgggtatttactaagatctttcagct 604



 Score =  246 bits (127), Expect = 5e-69
 Identities = 154/163 (94%), Gaps = 1/163 (0%)
 Strand = Plus / Plus

                                                                       
Query: 460 gagtgtgtggtgggtatttactaagctctctcagctgtaaagccctgggtgtgtggtggg 519
           ||||||||||||||||||||||||||||| ||| || ||||| |||| |||||||| |||
Sbjct: 432 gagtgtgtggtgggtatttactaagctctgtcaactataaagtcctgagtgtgtgg-ggg 490

                                                                       
Query: 520 tatttactaagctctctcagctgtaaagccctgggtgtgtggtgggtatttactaagctc 579
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 491 tatttactaagctctctcaactgtaaagccctgagtgtgtggtgggtatttactaagctc 550

                                                      
Query: 580 tctcagctgtaaagccctgagtgtgtggtgggtatttactaag 622
           ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 551 tctcagctgtaaagccctgggtgtgtggtgggtatttactaag 593



 Score =  219 bits (113), Expect = 8e-61
 Identities = 131/137 (95%), Gaps = 1/137 (0%)
 Strand = Plus / Plus

                                                                       
Query: 554 gtgtgtggtgggtatttactaagctctctcagctgtaaagccctgagtgtgtggtgggta 613
           ||||||||||||||||||||||||||| ||| || ||||| ||||||||||||| |||||
Sbjct: 434 gtgtgtggtgggtatttactaagctctgtcaactataaagtcctgagtgtgtgg-gggta 492

                                                                       
Query: 614 tttactaagctctctcaactgtaaagccctgggtgtgtggtgggtatttactaagctctc 673
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 493 tttactaagctctctcaactgtaaagccctgagtgtgtggtgggtatttactaagctctc 552

                            
Query: 674 tcagctgtaaagccctg 690
           |||||||||||||||||
Sbjct: 553 tcagctgtaaagccctg 569



 Score =  134 bits (69), Expect = 3e-35
 Identities = 87/93 (93%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                       
Query: 598 gagtgtgtggtgggtatttactaagctctctcaactgtaaagccctgggtgtgtggtggg 657
           ||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||| |||
Sbjct: 432 gagtgtgtggtgggtatttactaagctctgtcaactataaagtcctgagtgtgtgg-ggg 490

                                            
Query: 658 tatttactaagctctctcagctgtaaagccctg 690
           ||||||||||||||||||| |||||||||||||
Sbjct: 491 tatttactaagctctctcaactgtaaagccctg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 5
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_j13.g1 MSMg01no520_j13.g1 CHROMAT_FILE:
MSMg01no520_j13.g1 PHD_FILE: MSMg01no520_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:41 2005
         (683 letters)



>mm_chr7_86600566_86601648
          Length = 1083

 Score = 1295 bits (670), Expect = 0.0
 Identities = 679/682 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcctacagctgcctacctctcacaccccgattcctgggcccatctaggtagaagaatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 882 aggcctacagctgcctacctctcacaccccgattcctgggcccatctaggtagaagaact 823

                                                                       
Query: 61  gggctgcttagacgtagaggctgaggccaagatggagaattcagggctgagccaacctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gggctgcttagacgtagaggctgaggccaagatggagaattcagggctgagccaacctct 763

                                                                       
Query: 121 agttctggtgagcaagacacctacctgcttgggctctctgggtgggtagtggacagttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 agttctggtgagcaagacacctacctgcttgggctctctgggtgggtagtggacagttgg 703

                                                                       
Query: 181 gacttcccaccagagttcactaggttttgggagacttggagatgctgccctattcccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gacttcccaccagagttcactaggttttgggagacttggagatgctgccctattcccctg 643

                                                                       
Query: 241 tggttcttaactgtaggggaccaaggagggaacctgtgaccatgctctcctgtcactttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tggttcttaactgtaggggaccaaggagggaacctgtgaccatgctctcctgtcactttg 583

                                                                       
Query: 301 caatttgcctgctcagtttcaggccctttccccacccccacctcccctacccgctggccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 caatttgcctgctcagtttcaggccctttccccacccccacctcccctacccgctggccc 523

                                                                       
Query: 361 ttgctgaatgcaggtgctggagcagggcctgatctgggtgtgtggccccacagcctgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttgctgaatgcaggtgctggagcagggcctgatctgggtgtgtggccccacagcctgctg 463

                                                                       
Query: 421 cttgtgcccccaaatccagccagcccacgtatcaccatggcaacggaccttataatgatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cttgtgcccccaaatccagccagcccacgtatcaccatggcaacggaccttataatgatg 403

                                                                       
Query: 481 tgaatatccctggttgctggtttttcaagctgcctcacaaggtatggtttgtggctgcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgaatatccctggttgctggtttttcaagctgcctcacaaggtatggtttgtggctgcct 343

                                                                       
Query: 541 catgttctcactgtgattctgacccacagtaggacttcatgcttactcagaccagggaac 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 342 catgttctcactgtgattctgacccacagtaggacttcatgcttactcagaccaggaaac 283

                                                                       
Query: 601 tgctttttgtgggattgacagtcatagaggctcctaaatcatatgatttagggcaatttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgctttttgtgggattgacagtcatagaggctcctaaatcatatgatttagggcaatttt 223

                                 
Query: 661 catgtcttactgcttttgattt 682
           ||||||||| ||||||||||||
Sbjct: 222 catgtcttattgcttttgattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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