BAC Information

Click to search

BAC

Clone NameMSMg01-520N07
Chromosome7 (Build37)
Map Location 70,328,905 - 70,329,217
singlet/doubletsinglet
Overlap geneChrna7
Upstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
Downstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520N07.T7 (MSMg01no520_n07.b1)MSMg01-520N07.TJ (MSMg01no520_n07.g1)
ACCAG591769AG591770
length773771
length of high quality
(start - end)		638 (64 - 701)662 (76 - 737)
definitionCHROMAT_FILE: MSMg01no520_n07.b1 PHD_FILE: MSMg01no520_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:59 2005CHROMAT_FILE: MSMg01no520_n07.g1 PHD_FILE: MSMg01no520_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGATCATTTGTTCCATTAAAACAAAACCAAAACCA
AAACCAAACCCCCCAAACAAAAAAGCAACTAGCCCCCTGCCCTGGACCTC
TCCAGAGGTGTATGTATCAATCTTATAGATCCATGCTTGCTAATTCTGTG
GGAGGCAGAGATGAGCTAAGGGATTCCAGAGAATCTTCAGGACAATAAAG
CAGATCTTTATAAACACTAAGTAAGAGTGGATAGTGTTCTCACACATTTG
CCCAAATATGTCACCGCTAGGAGAGAATGCTAATGCCAACTGTGGACTCC
AGGTAACAGCTCCATGTCCTAGTAGGTTCAGTTACTATGAAAAATACACC
TCTTAGGGTAATGCTAGTATTATCCGAGGCTATCTATGTGTAAGGGAAAA
AGGTGTGGAAGAACTCTCTGTACTTTGCACTCCTTTTTTGCCCTGAAACA
AAAAAAAATGCTCTAAAAATAATATCTACTAAAAATGAAACAATGACCCA
GTTATAAACCACATACCTATGTAAAATATAGCAATATAGGCAAGGTAAAA
ATAAAATGATAGAAGAAAGTAGAGCATGCAAACCTTAACTAAAACAGACC
AGATATGGCTATATTGGTATAAACTATTCTTCACCACCAATTACATTGCC
AAAATCTAAGGGTGCTGGTGTGAAATTATAAATCTGTCAGAGTACAAAGA
ACACCCAGCAATCCTTAGCTTGG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAACAGGAACTACAAAGGAAAGCTT
CATCAACAAAGTACAAGAGATGGAAGACAGAATCTCAGGTATTGAAGATC
CACTAAAAGAAATGGATATGTAGGTCAAAGAAAATGTTAAATGTAAAAAT
AAAAACTCCCAACATAAACTATCCAGGAAATGTGAAGCACTTTGAAAAGA
CTGAGCCTGAATATAACAGGAATATAGGTTAGAGAAAAATCCCAGGTCAA
AGGCCCAGAAAATACTTTCAACAATAACATAAAAGAAAAATTTCCTAACC
TAAAGGAGATGCCTATCAAAGTACAAGAAGCATGCTGAATATCAAGCAAA
TTGGGCAAGAAAAGAAAGATCCTCACCATATAATAATCAAAACACTAAGC
ATACAGAACAAATAACGAATATTTAAAAAGCAAAGGAAAAGGACAAAGTA
ATATATAACAGCAGACCTACCAGAATTTTACAATTTCTCAGTAGAGATGT
GCTGCAGACCCTAAGAGATCACAGATATCCGCTCATTCTATTAAAACTAG
CAAAACTATCAATCACCACAGATTGAAAAACAAGGTATTTCATAATAAAG
TAAAATTTAAACAATATTTATTATTAAATCCAGCCCTACAGAAGGTACTA
GAAAAAAACTGCAGCCAAAGGAGATTAACTATACCCCTCAAATCAAAGGG
AAAAATAATATCATACCAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_n07.b1 MSMg01no520_n07.b1 CHROMAT_FILE:
MSMg01no520_n07.b1 PHD_FILE: MSMg01no520_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:59 2005
         (638 letters)



>mm_chr7_70328905_70329942
          Length = 1038

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgatcatttgttccattaaaacaaaaccaaaaccaaaaccaaaccccccaaacaaaaaag 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgatcatttgttccattaaaacaaaaccaaaaccaaaaccaaaccccccaaacaaaaaag 254

                                                                       
Query: 63  caactagccccctgccctggacctctccagaggtgtatgtatcaatcttatagatccatg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caactagccccctgccctggacctctccagaggtgtatgtatcaatcttatagatccatg 194

                                                                       
Query: 123 cttgctaattctgtgggaggcagagatgagctaagggattccagagaatcttcaggacaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cttgctaattctgtgggaggcagagatgagctaagggattccagagaatcttcaggacaa 134

                                                                       
Query: 183 taaagcagatctttataaacactaagtaagagtggatagtgttctcacacatttgcccaa 242
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 taaagcagctctttataaacactaagtaagagtggatagtgttctcacacatttgcccaa 74

                                                                       
Query: 243 atatgtcaccgctaggagagaatgctaatgccaactgtggactccaggtaacagctccat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  atatgtcaccgctaggagagaatgctaatgccaactgtggactccaggtaacagctccat 14

                        
Query: 303 gtcctagtaggtt 315
           |||||||||||||
Sbjct: 13  gtcctagtaggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |