BAC Information

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BAC

Clone NameMSMg01-520P21
Chromosome7 (Build37)
Map Location 36,523,994 - 36,692,880
singlet/doubletdoublet
Overlap geneDpy19l3, zfp507
Upstream geneChst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5
Downstream geneLOC100043872, EG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520P21.T7 (MSMg01no520_p21.b1)MSMg01-520P21.TJ (MSMg01no520_p21.g1)
ACCAG591893AG591894
length757765
length of high quality
(start - end)		708 (50 - 757)346 (81 - 426)
definitionCHROMAT_FILE: MSMg01no520_p21.b1 PHD_FILE: MSMg01no520_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:11 2005CHROMAT_FILE: MSMg01no520_p21.g1 PHD_FILE: MSMg01no520_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,523,994 - 36,524,697)(36,692,535 - 36,692,880)
sequence
GGAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTATGTAGACCAGTCTGGCTTCTGTTGGCTGCTTCTGCCA
CCTGAGTACTGAGGTTAAAGGCATGCAATGCCATGCCCCACATTTGTCAT
TGTTTAAAAATCTGTCCACAGTCTGGGTTAAATATTTCCTATCAACTTCT
TTCAGAGCTTGAAAATCATTTCCCAGGCTAAAAAGAGTTTGTATAATGCC
TTTGGTGGTTTGAATAAGAAAGGCCTTCATAGGCTCATGTATCTGAATGC
TTGCCACCAGGGAGTGGCATTATTTGAGAGGATTAGAAGGATTGGAACAA
ATGTGGCCTTGTTGGAGGAAGTGTGTCACTAGGAGTGGGCTTTAAGGTTC
CAAAAGCCCATGCCTGGTCTATACTCTCTCTCTTTCTTGGCCTACAGATG
AGGAGGTAGCTACTGTTCCAGAGCCATGCTCCCTGCCATGGTAAAGGACT
AAACCTCAGAAACTGTAAAGGGTAGGAGGAGGTGAATGCTTTCTCTTCTA
AGAGTTGCCTTGGTCGTGATGTCTCTTCACAGCAGCAGAACAGTGACTAA
GACACTGCCTTTATATAGGATGAGAGAAGTAAGGTGACATATCAATTGCT
TATTCTATAAGCATCATTCAAAAGTAATTAATTTTTTGTGACAGACTAAT
ATGTAAGTCTCTACTGTAGGCCAAGTTTAGCTTCAAACTCACGACCCTCC
TGCCTTN

TTTTACTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAATGAGCAAGTGAGTGT
GTCTTTAGCAGACAAAGAGACAGGTGAATGGATAGTAAACAGATGGAAGC
CTGAGAAGCAGGGGACCTGGAGCACCAGCAGAAGGGGGCGTCACATACAG
AAGCTGCACGATGCTTTAGAGGAAGAAACAGAACCCACGTGACTCGCGCA
CCTTCCCGTAAGCTTCCCGAGGAGAGCCACTAGTCCTTACACTCCAAACA
GCACCCACTGTGGCCTCAAACTCCTCCCACCAAAATTGGTTTGCTTTATT
ACCACACACTCATTATACAAACTGATAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGCTTTGTTGCTGTGCGTGTGGT
CCCTGTTGCTTCTTTTTCTTCTGTCTCCTTCTTTTTGTTTTTCCTTTTTG
TTTTTTGCTGTGCTCGTTCTCCTTTGCTTTCTTGTTTCTTTTCTGTTGTG
TTTTTGGTTCGTGCTTCTCTTCTTTTTCCTTCTCTCCTCTTTGTTTGTCT
TTTCGCTCCTTCCCTTTTCTTTTTTTTTCTCCTTTCCCTTTTCTTTTTTC
TTGCTTTCTCTTGTTTTTTTTTTTCTTTCCTTTCTTTCTCTGTCTCTCTT
TCCGTTTTTGTGTGGTTCTTTTTGCGTCTTTCTCCTCTCGTGTGGTTCCT
TTTCCTTCTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_p21.b1 MSMg01no520_p21.b1 CHROMAT_FILE:
MSMg01no520_p21.b1 PHD_FILE: MSMg01no520_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:11 2005
         (708 letters)



>mm_chr7_36523791_36524898
          Length = 1108

 Score = 1245 bits (644), Expect = 0.0
 Identities = 689/704 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatgtagaccagtctggcttctgttggctgcttctgccacctgagtactga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactatgtagaccagtctggcttctgttggctgcttctgccacctgagtactga 263

                                                                       
Query: 64  ggttaaaggcatgcaatgccatgccccacatttgtcattgtttaaaaatctgtccacagt 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 ggttaaaggcatgcaatgccatgccccacatttgtcactgtttaaaaatctgtccacagt 323

                                                                       
Query: 124 ctgggttaaatatttcctatcaacttctttcagagcttgaaaatcatttcccaggctaaa 183
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 ctgggttaaatatttcctatcaacttcttacagagcttgaaaatcatttcccaggctaaa 383

                                                                       
Query: 184 aagagtttgtataatgcctttggtggtttgaataagaaaggccttcataggctcatgtat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagagtttgtataatgcctttggtggtttgaataagaaaggccttcataggctcatgtat 443

                                                                       
Query: 244 ctgaatgcttgccaccagggagtggcattatttgagaggattagaaggattggaacaaat 303
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgaatgcttaccaccagggagtggcattatttgagaggattagaaggattggaacaaat 503

                                                                       
Query: 304 gtggccttgttggaggaagtgtgtcactaggagtgggctttaaggttccaaaagcccatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtggccttgttggaggaagtgtgtcactaggagtgggctttaaggttccaaaagcccatg 563

                                                                       
Query: 364 cctggtctatactctctctctttcttggcctacagatgaggaggtagctactgttccaga 423
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 cctggtctatactctctctctttcttggccttcagatgaggaggtagctactgttccaga 623

                                                                       
Query: 424 gccatgctccctgccatggtaaaggactaaacctcagaaactgtaaagggtaggaggagg 483
           ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |
Sbjct: 624 gccatgctccctgccttggtaatggactaaacctcagaaactataaagggtaggaggaag 683

                                                                       
Query: 484 tgaatgctttctcttctaagagttgccttggtcgtgatgtctcttcacagcagcagaaca 543
           ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 684 tgaatgctttctcttataagagttgccttggttgtgatgtctcttcacagcaacagaaca 743

                                                                       
Query: 544 gtgactaagacactgcctttatataggatgagagaagtaaggtgacatatcaattgctta 603
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 744 gtgactaagacactgcctttatatagggtgagagaagtaaggtgacatgtcaattgctta 803

                                                                       
Query: 604 ttctataagcatcattcaaaagtaattaattttttgtgacagactaatatgtaagtctct 663
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 804 ttctataagcatcatttaaaagtaattaattttttgtggcagactaatatgtaagtctct 863

                                                       
Query: 664 actgtaggccaagtttagcttcaaactcacgaccctcctgcctt 707
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 actgtaggccaagtttagcttcaaactcacgaccctcctgcctt 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no520_p21.g1 MSMg01no520_p21.g1 CHROMAT_FILE:
MSMg01no520_p21.g1 PHD_FILE: MSMg01no520_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:11 2005
         (346 letters)



>mm_chr7_36692338_36693080
          Length = 743

 Score =  661 bits (342), Expect = 0.0
 Identities = 345/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaatgagcaagtgagtgtgtctttagcagacaaagagacaggtgaatggatagtaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 acaaatgagcaagtgagtgtgtctttagcagacaaagagacaggtgaatggatagtaaac 484

                                                                       
Query: 61  agatggaagcctgagaagcaggggacctggagcaccagcagaagggggcgtcacatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agatggaagcctgagaagcaggggacctggagcaccagcagaagggggcgtcacatacag 424

                                                                       
Query: 121 aagctgcacgatgctttagaggaagaaacagaacccacgtgactcgcgcaccttcccgta 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aagctgcactatgctttagaggaagaaacagaacccacgtgactcgcgcaccttcccgta 364

                                                                       
Query: 181 agcttcccgaggagagccactagtccttacactccaaacagcacccactgtggcctcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agcttcccgaggagagccactagtccttacactccaaacagcacccactgtggcctcaaa 304

                                                                       
Query: 241 ctcctcccaccaaaattggtttgctttattaccacacactcattatacaaactgatagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctcctcccaccaaaattggtttgctttattaccacacactcattatacaaactgatagta 244

                                                         
Query: 301 gtagtagtagtagtagtagtagtagtagtagtagtagtagtagtag 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtagtagtagtagtagtagtagtagtagtagtagtagtagtagtag 198


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 743
Length adjustment: 9
Effective length of query: 337
Effective length of database: 734
Effective search space:   247358
Effective search space used:   247358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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