BAC Information

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BAC

Clone NameMSMg01-521B03
Chromosome7 (Build37)7 (Build37)
Map Location 93,944,679 - 93,945,358104,842,269 - 104,842,905
singlet/doubletsingletsinglet
Overlap geneEG546983
Upstream geneEG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1
Downstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521B03.T7 (MSMg01no521_b03.b1)MSMg01-521B03.TJ (MSMg01no521_b03.g1)
ACCAG591951AG591952
length736726
length of high quality
(start - end)		684 (53 - 736)641 (86 - 726)
definitionCHROMAT_FILE: MSMg01no521_b03.b1 PHD_FILE: MSMg01no521_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:18 2005CHROMAT_FILE: MSMg01no521_b03.g1 PHD_FILE: MSMg01no521_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:18 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,944,679 - 93,945,358)(104,842,269 - 104,842,905)
sequence
NNNNNNNCCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTATTTATTAATTTAGCCTCTTATTATCCCATATAAA
TTCATTACTTACACATATGAGACATAACAAACACCATATCTGTCTGTGGA
TAGAATATGATTAAAACAAAGACTAATATAGGCAATGGATAGATGCCAAA
TGAGGTAAAATGATGAATAAGAAAGAATTCCATAAATATAAGAGCATATC
TGCAGTGCAAAGAACACTTGATTGACTTCTTTTTTTAAAAGATTTCACAT
AGTAGCCTGAGGGAATGCATAAGTCTGGAATAATTATAGGAAGGGATTAA
ATATGATGATAATGCATTCTATGATATCCACAACTAGGTAATATACTTCT
TTTATAAAGGTACTTCAAGTTAGGGTAATTGTGGGAGAAAAATATGAAAA
AATGTCTGCATTGTTCTAAGACAGCCATTTGAATTATTTGCTGATTTATT
TTAAATTTCTCTCTGTATGTGCATCAAAAGAAAAATAAGTATCATATGAT
ACAGGCCTAATACTAATTAGTATTTTAGGAGAGTTAATTTAAAAAGTATC
CCAGGAATTTAAGGTGTGTTCACTATATGAAAAATTCATTAATGTAATCT
ACCATAAAACAAACTCAAAAATTTACATGATCATCTCAGATAATGTAAAG
GCATTTGACAAAACATGATACCTCCCATGTTAAAAG

NAAAAAACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGTTGCCACAGA
GCCTGCTGGCTTCTTGGAATTTCTCTTAGAAACTAGTGACATTTTTGTAA
GAACTTTTAAATACAGTTTAATAATTCCATGACCTGTTCATTTTAAACAC
CGAAAGTCGAGCAAGAGATAATTAGAAGACAGATTAAATAGGAACATACC
CATCTTTTTCATGCTTCAGAGAAGAACATTATATAAAGAAGAATACTCAG
AAGAATGGAGATGAGAGACAAAGAGAACTGAAAAGAGAAAGGCTCAAAAG
CAATAGGAAAGCTACCAGGTCACAGACACAGACAGGGGTTAGAATCTTCT
AGGGGTTAGGCTAGAAAGATGGAAACTGAGTCAGGTGGCTCTGAAATGGG
CAAGAGGTACTGGACAGGGAAGGTGGTCTGTACCACAAGCTTGTCTTGTA
GGTTCTAGCTAACTTTCCCTAGAGATGACTGTATGCACTAGTGATGTATA
CACTAGGCCACATCCTCTTAGTGCTCTTTCTCTGATTGTCGTTTAGACTT
TGAATAATCTTGAACTTATTGTCAGAATTACTCAAGGCTTTATCTCATCC
AGAAGGCTCCTAACATCTAACATTTAATTTCATTAAAATAGTTTTATTAT
AATTCCACATCGACTAAATAATCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_b03.b1 MSMg01no521_b03.b1 CHROMAT_FILE:
MSMg01no521_b03.b1 PHD_FILE: MSMg01no521_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:18 2005
         (684 letters)



>mm_chr7_93944614_93945697
          Length = 1084

 Score = 1253 bits (648), Expect = 0.0
 Identities = 672/680 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctatttattaatttagcctcttattatcccatataaattcattacttacacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaattctctatttattaatttagcctcttattatcccatataaattcattacttacacat 686

                                                                       
Query: 65  atgagacataacaaacaccatatctgtctgtggatagaatatgattaaaacaaagactaa 124
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 atgagacataacaaacaccgtatctgtctgtgggtagaatatgattaaaacaaagactaa 626

                                                                       
Query: 125 tataggcaatggatagatgccaaatgaggtaaaatgatgaataagaaagaattccataaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tataggcaatggatagatgccaaatgaggtaaaatgatgaataagaaagaattccataaa 566

                                                                       
Query: 185 tataagagcatatctgcagtgcaaagaacacttgattgacttctttttttaaaagatttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tataagagcatatctgcagtgcaaagaacacttgattgacttctttttttaaaagatttc 506

                                                                       
Query: 245 acatagtagcctgagggaatgcataagtctggaataattataggaagggattaaatatga 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 acatagtagcctgagggaatgcataagtctggaagaattataggaagggattaaatatga 446

                                                                       
Query: 305 tgataatgcattctatgatatccacaactaggtaatatacttcttttataaaggtacttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgataatgcattctatgatatccacaactaggtaatatacttcttttataaaggtacttc 386

                                                                       
Query: 365 aagttagggtaattgtgggagaaaaatatgaaaaaatgtctgcattgttctaagacagcc 424
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagttagggtaattgtgggaggaaaatatgaaaaaatgtctgcattgttctaagacagcc 326

                                                                       
Query: 425 atttgaattatttgctgatttattttaaatttctctctgtatgtgcatcaaaagaaaaat 484
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgaattatttgctgatttatttcaaatttctctctgtatgtgcatcaaaagaaaaat 266

                                                                       
Query: 485 aagtatcatatgatacaggcctaatactaattagtattttaggagagttaatttaaaaag 544
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtatcatacaatacaggcctaatactaattagtattttaggagagttaatttaaaaag 206

                                                                       
Query: 545 tatcccaggaatttaaggtgtgttcactatatgaaaaattcattaatgtaatctaccata 604
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 tatcccaggaatttaaggtgtgttcactatatgaaaaattcattaatataatctaccata 146

                                                                       
Query: 605 aaacaaactcaaaaatttacatgatcatctcagataatgtaaaggcatttgacaaaacat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aaacaaactcaaaaatttacatgatcatctcagataatgtaaaggcatttgacaaaacat 86

                               
Query: 665 gatacctcccatgttaaaag 684
           ||||||||||||||||||||
Sbjct: 85  gatacctcccatgttaaaag 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_b03.g1 MSMg01no521_b03.g1 CHROMAT_FILE:
MSMg01no521_b03.g1 PHD_FILE: MSMg01no521_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:18 2005
         (641 letters)



>mm_chr7_104842069_104843109
          Length = 1041

 Score = 1216 bits (629), Expect = 0.0
 Identities = 635/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgttgccacagagcctgctggcttcttggaatttctcttagaaactagtgacatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 agttgttgccacagagcctgctggcttcttggaatttctcttagaaactagtgacatttt 778

                                                                       
Query: 61  tgtaagaacttttaaatacagtttaataattccatgacctgttcattttaaacaccgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tgtaagaacttttaaatacagtttaataattccatgacctgttcattttaaacaccgaaa 718

                                                                       
Query: 121 gtcgagcaagagataattagaagacagattaaataggaacatacccatctttttcatgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 717 gtcgagcaagagataattagaagacagattaaataggaacatacccatctctttcatgct 658

                                                                       
Query: 181 tcagagaagaacattatataaagaagaatactcagaagaatggagatgagagacaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tcagagaagaacattatataaagaagaatactcagaagaatggagatgagagacaaagag 598

                                                                       
Query: 241 aactgaaaagagaaaggctcaaaagcaataggaaagctaccaggtcacagacacagacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aactgaaaagagaaaggctcaaaagcaataggaaagctaccaggtcacagacacagacag 538

                                                                       
Query: 301 gggttagaatcttctaggggttaggctagaaagatggaaactgagtcaggtggctctgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gggttagaatcttctaggggttaggctagaaagatggaaactgagtcaggtggctctgaa 478

                                                                       
Query: 361 atgggcaagaggtactggacagggaaggtggtctgtaccacaagcttgtcttgtaggttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atgggcaagaggtactggacagggaaggtggtctgtaccacaagcttgtcttgtaggttc 418

                                                                       
Query: 421 tagctaactttccctagagatgactgtatgcactagtgatgtatacactaggccacatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tagctaactttccctagagatgactgtatgcactagtgatgtatacactaggccacatcc 358

                                                                       
Query: 481 tcttagtgctctttctctgattgtcgtttagactttgaataatcttgaacttattgtcag 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 357 tcttagtgctctttctctgattgtcgtttagactttgaataaccttgaacttattgtcag 298

                                                                       
Query: 541 aattactcaaggctttatctcatccagaaggctcctaacatctaacatttaatttcatta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aattactcaaggctttatctcatccagaaggctcctaacatctaacatttaatttcatta 238

                                                
Query: 601 aaatagttttattataattccacatcgactaaataat 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaatagttttattataattccacatcgactaaataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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