BAC Information

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BAC

Clone NameMSMg01-521B05
Chromosome7 (Build37)
Map Location 60,233,995 - 60,234,331
singlet/doubletsinglet
Overlap genenone
Upstream geneGas2, 1700015G11Rik, EG668783, EG620782, LOC100040692
Downstream geneGm1865, LOC100040718, LOC668789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521B05.T7 (MSMg01no521_b05.b1)MSMg01-521B05.TJ (MSMg01no521_b05.g1)
ACCAG591955AG591956
length759746
length of high quality
(start - end)		676 (52 - 727)598 (83 - 680)
definitionCHROMAT_FILE: MSMg01no521_b05.b1 PHD_FILE: MSMg01no521_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:18 2005CHROMAT_FILE: MSMg01no521_b05.g1 PHD_FILE: MSMg01no521_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAGATTCTTGTTTATATTTATAACTTTTTCTAGGCAGT
CAATGTTCAACCCAATCCTTGGACACCTGTAAATTCATGAAGATTATAAA
CTTTTATATTCTACTTTTAAAAACTCAGGAAAAAGTGGTTTGAATATATT
TGACTCATGGGCAGTGGCACTATTAGAAGGTATAGCTCTGTTGGAATAGG
TATGGCCCTGTTGAAGGAAGTATTTCACTATGTGGGTGGGCTTTGAGTAC
TCTTAATGCTCAGGCTCTGCCCACTACCAAAGAAACCCCCTCCTGGTTGT
CTTCCAACAAGATGTAAAACTCTCATCTCCTTCTAGAGCACCAGGTCTGC
CTTAATACTGTGATGCTTCCTGCCATGATAATGAACTGAACCTCTGAAAA
TGTAAGTCACCCTCAAGTAAATGTTTTCTTTGGTAAGAGAGAAAAGAAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGGTAAAATTTGAA
AACCATGGCTCTCAATTCACTGTGCAATCTATAGATTGAGCCTTGGTCCT
TATTAGTGCTAATCAATTTTCCAAAACAAGAAATACCCCTGTTTTTCTTT
TATGCACTA

NNCCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTATGGAATACCGA
ATGGCTGAGAAGCACTGAAAAAATGTTCAGCATCCTTAATCATCAGAAAA
ATGCAAATCAAAACAACTCTGAGATTCCACCTCACAACAGTCAAAATAGC
TAAGATAAAAAATTCAGGTGACTGCAGATGCTATTGAGGATGTAGAGAAA
GAGGAACACTCCTCCATTGTTGGTGAGATTACAAGCTTGAACAACCACTC
TGGAAATCAGCCTGGTGGTTTTTCAGAAAATTGGACATAGCATTACTGGA
GGATCCTGCAATACCTCTCCTGGGCTATATCTAAAAGATGCTCCAACTGG
TAAGAAAGACACATGCTCCACTATGTTCATAGCAGCCATATATATAATAG
CCAGAAGCTGGAAAGAACCCAAATTTCCCTCAACAGAGGAATGGATACAG
AAAATGTAGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCAAGCAAATTCCTAGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACCTAGTCACAAAAGAACTCACATGACATGTACTCACTG
ATAAGTGGATACTAGCCCAGAAACTTAGAATACCCTAGATACAAGATACA
ATTTGCAAAACTCATGACACTCAAGAAGAAAGAAGACACTTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_b05.b1 MSMg01no521_b05.b1 CHROMAT_FILE:
MSMg01no521_b05.b1 PHD_FILE: MSMg01no521_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:18 2005
         (676 letters)



>mm_chr7_60233995_60235071
          Length = 1077

 Score =  590 bits (305), Expect = e-172
 Identities = 329/337 (97%), Gaps = 1/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattc-acagattcttgtttatatttataactttttctaggcagtcaatgttcaaccca 63
           |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 337 gaattcaacagattcttgtttatatttataactttttctaggcagtcaatatttaaccca 278

                                                                       
Query: 64  atccttggacacctgtaaattcatgaagattataaacttttatattctacttttaaaaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 277 atccttggacacctgtaaattcatgaagattataaacttttatattctacttttaaaaag 218

                                                                       
Query: 124 tcaggaaaaagtggtttgaatatatttgactcatgggcagtggcactattagaaggtata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 217 tcaggaaaaagtggtttgaatatatttgactcatgggcagtggcactattagaaggtatg 158

                                                                       
Query: 184 gctctgttggaataggtatggccctgttgaaggaagtatttcactatgtgggtgggcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gctctgttggaataggtatggccctgttgaaggaagtatttcactatgtgggtgggcttt 98

                                                                       
Query: 244 gagtactcttaatgctcaggctctgcccactaccaaagaaaccccctcctggttgtcttc 303
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 97  gaggactcttaatgctcaggctctgcccactacaaaagaaaccccctcctggttgccttc 38

                                                
Query: 304 caacaagatgtaaaactctcatctccttctagagcac 340
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  caacaagatgtaaaactctcatctccttctagagcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1077
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1067
Effective search space:   710622
Effective search space used:   710622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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