Query= MSMg01no521_b18.b1 MSMg01no521_b18.b1 CHROMAT_FILE:
MSMg01no521_b18.b1 PHD_FILE: MSMg01no521_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:21 2005
(517 letters)
>mm_chr7_124666339_124667255
Length = 917
Score = 820 bits (424), Expect = 0.0
Identities = 470/514 (91%), Gaps = 44/514 (8%)
Strand = Plus / Minus
Query: 4 ggaattcctgggtgtccttctgtctctgcctccctagtttggggataataagcacacacc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ggaattcctgggtgtccttctgtctctgcctccctagtttggggataataagcacacacc 654
Query: 64 acatctccaggcccttttaaaaacgagaattttgggaatggaactctatcatcaagctgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 acatctccaggcccttttaaaaacgagaattttgggaatggaactctatcatcaagctgg 594
Query: 124 caaaacaagcactttcggcagtttgccttgtagattccatacatctattcacaggagcat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 caaaacaagcactttcggcagtttgccttgtagattccatacatctattcacaggagcat 534
Query: 184 tgcctgaagtctttggctcagcatgtagaattaagtcccacgactcacagcaacttagct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgcctgaagtctttggctcagcatgtagaattaagtcccacgactcacagcaacttagct 474
Query: 244 ccccgactccttgaagtccctcacccgcattacaccagcctcttcccatggggttgtcta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ccccgactccttgaagtccctcacccgcattacaccagcctcttcccatggggttgtcta 414
Query: 304 tggcctaagttcattctatgtgtacctagatatttcttagattggtgatctgattacctc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggcctaagttcattctatgtgtacctagatatttcttagattggtgatctgattacctc 354
Query: 364 ctggggaagtttgacgagagagagagagagagagagagagagagagagagagagagagag 423
||||||||||||||| |
Sbjct: 353 ctggggaagtttgac--------------------------------------------g 338
Query: 424 agagagagagagagagagagagagagagagagtaggggaggcattattaatcaagggaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agagagagagagagagagagagagagagagagtaggggaggcattattaatcaagggaga 278
Query: 484 aggtaaggtgagccttgcccacttaggtggaatt 517
||||||||||||||||||||||||||||||||||
Sbjct: 277 aggtaaggtgagccttgcccacttaggtggaatt 244
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_b18.g1 MSMg01no521_b18.g1 CHROMAT_FILE:
MSMg01no521_b18.g1 PHD_FILE: MSMg01no521_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:21 2005
(410 letters)
>mm_chr7_124498569_124499378
Length = 810
Score = 785 bits (406), Expect = 0.0
Identities = 409/410 (99%)
Strand = Plus / Plus
Query: 1 tgacaagacacctagctcaccatattttattacagtatctccaaaagactaggtgatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacaagacacctagctcaccatattttattacagtatctccaaaagactaggtgatccc 260
Query: 61 ttgacaagccaaagaaagaagccagaagtagacccttcccctcagcactaagcagggtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgacaagccaaagaaagaagccagaagtagacccttcccctcagcactaagcagggtaa 320
Query: 121 cctctgccaacaccttcattttagacctacagcctctacaactttgccagtagctcctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctgccaacaccttcattttagacctacagcctctacaactttgccagtagctcctgg 380
Query: 181 cgaagccactcacattgtggtgttttgttagagaagtctcagccatctaatccggttggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgaagccactcacattgtggtgttttgttagagaagtctcagccatctaatccggttggg 440
Query: 241 tcagatcaatctcgtaaagagttatcttggtcttagaaagtactgccagaatgctgtgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagatcaatctcgtaaagagttatcttggtcttagaaagtactgccagaatgctgtgca 500
Query: 301 gggagccgaggaacacgaaagcagagagcttctcttttctctatttttgatcttcaccta 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 gggagccgaggaacacgaaagcagagagcttctctttcctctatttttgatcttcaccta 560
Query: 361 ccttctctaccctcctccccatcccactctaaaacccctccattttggtg 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttctctaccctcctccccatcccactctaaaacccctccattttggtg 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
