BAC Information

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BAC

Clone NameMSMg01-521E15
Chromosome7 (Build37)
Map Location 136,932,346 - 136,932,962
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC210714, LOC100043144, Ppapdc1a, Brwd2
Downstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521E15.T7 (MSMg01no521_e15.b1)MSMg01-521E15.TJ (MSMg01no521_e15.g1)
ACCAG592119AG592120
length755760
length of high quality
(start - end)
569 (46 - 614)617 (76 - 692)
definitionCHROMAT_FILE: MSMg01no521_e15.b1 PHD_FILE: MSMg01no521_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:34 2005CHROMAT_FILE: MSMg01no521_e15.g1 PHD_FILE: MSMg01no521_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGAGCATTTCGTCTTTTTGTTTGTTTGTTTGTTTGTTTGTTTG
TTTGTTTGTTTTTGTTGGAGGATACCTAACCAATATAGGAAGGAAAGGGA
AAGAAAAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGTTAGCTTTGTTCTGGAGGGCT
TTTTGAAGGTACTGTCTCTCATGGTGGGGAAGTTTAGTAGCAGGAGCTTG
GAGGCAGCCTGTCACATTGCATCTACTGTCAAGAAGCAGAAGTGAGCACT
TATTATCTTTTCATTCATGCCAGATCCACACCTCGTGGGATGGTGCTGCT
CATAGGTAGTGGGAATCTCTCTATCCTAACTAGCCCTGTCTATAAACTTC
CTCATAGACATGTTCAGAAATTCTTCTCCTAGTGATACTAGGTTGTGTGA
AGCTACCAGTTAATGCTAGTCATCACACAACTAGCAAGACCTGTTTTCTG
GTTGTTCTTGGTGTCCACATTTCTGTGAATGCTTAAAAGTGAGTTCTGCT
CCTCTAGAAAGCCCCAGCCCCAGCTGATTCAGTATCCCTTGTCTTGGAGT
CTTTCAATCTTAGAGCTAGTTCCCTCCCTATACCTTCTTCCCTTCCTGTG
TTACTATAGCTTGTACACAGCACTTTATCCCTCACTGATGACATCTGGGG
CCAGT
CCCATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGTCTGGCCCTGTAATGACAGAG
AGCGTTCAACAAAGAGTCATAAAAAGTCATAGAAAGCCTTAAAAAGCAAA
TAATCACATTTGCCTTTCTCCGGGGAATTGAACTACATGCATTTTAATAA
GACCCTCCCGATGTGGCTACGTTAGAAAAGGGCATACTAAGCAGAGGAGG
AGGAATATTTTCACCACATTTTTGGTCTCTGGAGGTATGTATTTAATTCA
TTTATATTTCATATGGGATTTTATTTTGAAATTAAACATGTATTTCCTAT
GATGTGAGTAAATGTTTTATGTTTTTGGCTGATGCATCAAATATATACTG
TGGTCACACATGCATCTGAGAGCAGATGTTTCCTAAAGCATTTTATTTAA
AAAAATAACAAGAGAGGTGTCCCCTAGGAAGTAGCTGATAGAAAAGGTCA
GTAAAGAACTGGAAGCTTTTGTGATGCTAAGAATACAAAAGATTGTTCAG
ATTTCAACTGTAGAGACATGAACACTCTGGAGGAATTTTCCAAGGGAAAG
TCAAGAGAGTTCGAAACACCTCCAGGTAGTGCGTTTGATCTGGTTGAAGT
TTTAATGGCTCCCTTGGGTTTGGGATCACAGTGCAATGCCTTCAGTGTGG
CATGCANGAAGTAAAGGGATAAAGAAAGATGCTAGGGGCTGTTGTCCTCC
TGAACTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_e15.g1 MSMg01no521_e15.g1 CHROMAT_FILE:
MSMg01no521_e15.g1 PHD_FILE: MSMg01no521_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:34 2005
         (617 letters)



>mm_chr7_136932146_136933162
          Length = 1017

 Score = 1154 bits (597), Expect = 0.0
 Identities = 612/617 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtctggccctgtaatgacagagagcgttcaacaaagagtcataaaaagtcatagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tgggtctggccctgtaatgacagagagcgttcaacaaagagtcataaaaagtcatagaaa 758

                                                                       
Query: 61  gccttaaaaagcaaataatcacatttgcctttctccggggaattgaactacatgcatttt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 757 gccttaaaaagcaaataatcacatttgcctttctccagggaattgaactacatgcatttt 698

                                                                       
Query: 121 aataagaccctcccgatgtggctacgttagaaaagggcatactaagcagaggaggaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 697 aataagaccctcccgatgtggctacgttagaaaagggcatactaagcagaggaagaagaa 638

                                                                       
Query: 181 tattttcaccacatttttggtctctggaggtatgtatttaattcatttatatttcatatg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 637 tattttcaccacatttttggtctctggaggtatatatttaattcatttatatttcatatg 578

                                                                       
Query: 241 ggattttattttgaaattaaacatgtatttcctatgatgtgagtaaatgttttatgtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ggattttattttgaaattaaacatgtatttcctatgatgtgagtaaatgttttatgtttt 518

                                                                       
Query: 301 tggctgatgcatcaaatatatactgtggtcacacatgcatctgagagcagatgtttccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tggctgatgcatcaaatatatactgtggtcacacatgcatctgagagcagatgtttccta 458

                                                                       
Query: 361 aagcattttatttaaaaaaataacaagagaggtgtcccctaggaagtagctgatagaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aagcattttatttaaaaaaataacaagagaggtgtcccctaggaagtagctgatagaaaa 398

                                                                       
Query: 421 ggtcagtaaagaactggaagcttttgtgatgctaagaatacaaaagattgttcagatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggtcagtaaagaactggaagcttttgtgatgctaagaatacaaaagattgttcagatttc 338

                                                                       
Query: 481 aactgtagagacatgaacactctggaggaattttccaagggaaagtcaagagagttcgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aactgtagagacatgaacactctggaggaattttccaagggaaagtcaagagagttcgaa 278

                                                                       
Query: 541 acacctccaggtagtgcgtttgatctggttgaagttttaatggctcccttgggtttggga 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atacctccaggtagtgcgtttgatctggttgaagttttaatggctcccttgggtttggga 218

                            
Query: 601 tcacagtgcaatgcctt 617
           |||||||||||||||||
Sbjct: 217 tcacagtgcaatgcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)