BAC Information

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BAC

Clone NameMSMg01-521N09
Chromosome7 (Build37)
Map Location 19,585,129 - 19,585,436
singlet/doubletsinglet
Overlap geneP42pop
Upstream geneCeacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2
Downstream geneIrf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521N09.T7 (MSMg01no521_n09.b1)MSMg01-521N09.TJ (MSMg01no521_n09.g1)
ACCAG592538AG592539
length754763
length of high quality
(start - end)		146 (102 - 247)310 (227 - 536)
definitionCHROMAT_FILE: MSMg01no521_n09.b1 PHD_FILE: MSMg01no521_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:17 2005CHROMAT_FILE: MSMg01no521_n09.g1 PHD_FILE: MSMg01no521_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCTTCACATTTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGGCATTGTGCTGTCTTGGTTAGCGCTCTACCTCTGGACC
ACGCCTCCATCCCTGGAATGGCTTTTTATGTACATGAAATCCAGCCATTA
TCAACATTGGACTTGGGCTGGCAAGATGGCTCAGTGGGTAATGGTGCTTG
TTGCCAATCTTGGAGACCTGAGTCCTGCTCCTAGGACCACCCACATGGCA
TAAGGAGAGAAGTCACAGCAAGCAGTTGTTCTTGACCTCTACAGTAGTTC
TGGTGCACTTGTGTATACATACAGGTGCAAACACACCCACTATAAATAAA
TCCTTATAGATGATATAAAGTCCATTGGGAGAGGACAGCATCGGTACTGG
TGATGAACATGAGTAAAGGATACGAACCTAGATAATGACAATATCAGCAC
CAAGGAGATGGATAGATGGCTCAGAGGTTAAGAGCACCGACTGCTCTTCC
AGAGGTCCTGAGTTCAATTCCCAGCAACAACATGGTGGCTCACAACCATC
CGTAATGAGATCTGACACCCCCTTCTGGTGTGTCTGAAGACAGCTACAGT
GTACCTATGCATAATAATATATAAATCTTTAAAAATAAGAAAACAAAGTC
TGCCTGATGTTGCTCGTTTGCTATTTTTGATAAAGATCCTCATCAATTAG
CCTATGTTTATTTCTTTTTATCCGGACGCACTATACTCGTGTTGTTCCTC
CCAC

NTTCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTATCTCTGCCAGATGTCCCGCCTCT
TCTCCCCTCCTTTGCTGTAAGCCGTTAGTTTTTTTCTTCACCAATAGGAA
GGTGAGAGAGGGAGAGCTTACAAAATAGGATGCAGGTGATGAGCAATTAT
ACAGGATGTCGGGCCTGTAAATCAGATGCCCGCCTGGTACAGATATCAGC
AGATAAATAGTACACCACCAGTCTTTACACAGTGCATAAAAGGATCACCC
CCAACACAGTTTAATGCATCCGCTCCTCGGCATTCAAAGACTGACTTCAT
GAGCGTTCCCTGGCATGCTCTAACTAGGTGGTATTACTAGTGTGTTCCTT
TTTGAGATATGGTCTTGCTTTATAGCCTAGGTTCGCCTGCAGCTCCAGAA
TACAAGTATTTCAAACAAATGCCTCGATAGTGGCCTAGCGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTTTTCCCGAT
TTTCTCCATTTTTTCCGGTTTTTTTCTTCTTCTTCTTTTCCTTTCTCTCC
GTTTTCTTTATTTTTCCGTTCTTTTTTTTTCCTTTTTTTGCCAACTTTGA
TTTCGTTGCCTTTCTTCCCGCCTTTCCCTTCTTCCCTTTCCCCTTCTTCC
CCTTTTCTTTCTCCGCCCCTTTTTTCGCTCTTTCACGTCGTTCCGTTCGC
TTTCCCACCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_n09.g1 MSMg01no521_n09.g1 CHROMAT_FILE:
MSMg01no521_n09.g1 PHD_FILE: MSMg01no521_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:17 2005
         (310 letters)



>mm_chr7_19584929_19585638
          Length = 710

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccgcctggtacagatatcagcagataaatagtacaccaccagtctttacacagtgca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tgcccgcctggtacagatatcagcagatgaatagtacaccaccagtctttacacagtgca 260

                                                                       
Query: 61  taaaaggatcacccccaacacagtttaatgcatccgctcctcggcattcaaagactgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaggatcacccccaacacagtttaatgcatccgctcctcggcattcaaagactgact 320

                                                                       
Query: 121 tcatgagcgttccctggcatgctctaactaggtggtattactagtgtgttcctttttgag 180
           ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgagcgttccctggcatgttctatctaggtggtattactagtgtgttcctttttgag 380

                                                                       
Query: 181 atatggtcttgctttatagcctaggttcgcctgcagctccagaatacaagtatttcaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatggtcttgctttatagcctaggttcgcctgcagctccagaatacaagtatttcaaac 440

                                                                       
Query: 241 aaatgcctcgatagtggcctagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 aaatgcctcgatagtggcctagcgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtg 500

                   
Query: 301 tgtgtgtg 308
           ||||||||
Sbjct: 501 tgtgtgtg 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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