BAC Information

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BAC

Clone NameMSMg01-522I14
Chromosome7 (Build37)
Map Location 135,462,467 - 135,463,024
singlet/doubletsinglet
Overlap geneEG628781
Upstream geneItgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158
Downstream geneRgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522I14.T7 (MSMg01no522_i14.b1)MSMg01-522I14.TJ (MSMg01no522_i14.g1)
ACCAG593070AG593071
length750745
length of high quality
(start - end)		562 (52 - 613)557 (80 - 636)
definitionCHROMAT_FILE: MSMg01no522_i14.b1 PHD_FILE: MSMg01no522_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:09 2005CHROMAT_FILE: MSMg01no522_i14.g1 PHD_FILE: MSMg01no522_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATAAGTGGTTATCAGATCCCCTAAACCTATAACAACAGA
TGCCTGTGAACCACCAAGTAGGTGCTGGGAACCAAAACTCGGGTTTTCTG
AAAGTGTAGCAAATGCTGCACAGAGCTATTTTCTCTGCCTGTGTATGATC
TGAATTTTTCCCTGGGTTTTCAAGACAGGGCTTCTCTGTGTTCCAGTGAG
TTCCTGGAACTCGCTCTGTAGACCAGGTTAGCCTCCAACTCAAGATCTAC
TCTGCTTCTTGAGTGCTGGAATTAAAGGTGGCACCACCATGCCTGACCTA
AATGTATTCCTGAACACAATTTGCAAAAATTTTATCAAGACTTTTTTCTT
TTCTTTTCTTCTTTTTTTTTTTTCGGAAACATGGTTTCTCTGTGTAGCCC
TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA
ATTCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTTCACCACC
ACGCCCGGCTAAGACTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCGAGAT
GGGGTTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACC
AAGCTGGCCTCGAACTCAGAAATCCGCTGTCTGCCTCCCGAGTGCTGGGA
TTAAAGGCGTGTGCCACCACGCCTGGCTAAGAATTTTTAATATCCATATT


NNNAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCATCTCAGGAGATTGCT
ACTTTTCTTCATCACAAATAGAAAGTGGCAGGGCGTTACTGTCCAGTTGC
TGTCCAGTTGCTCGAACACCTAACCACACAAGACTCCACAGAATTCACAC
TCTGGGTTTTTGAGATCTTCATGATGCCAAGAGGAAGATGGCAGGTTGGG
TACATCTTCCTAAAGGCTTATAGGCAGCTGAGGCGTGAGCTGGGCCCTAG
ACAAGCCTCAGGAGAAAGGGCCCGTGACACTGAGCAGGCACACTGAGGCA
AGGGCAGATCCAGGTTTTGTGAGACCTAAAGCTTAAGGAATGTGGGAAAT
TCCCTCTTTCAGACCATGAAGAGCAGCTGGGCGTGGTGGCACACACTCAG
CGATGTGGCGGCTCAAGCAGTAGGAGCCTCATTAGTTTGAAGTCAGCCTG
AGCTATTTATAGCAAGGTCCTGCCTCATGGAGCTAGAGAGATGGCTCAGC
TGTGATGGGCACTTGCTGCTCTTACAGAGGACCCAAGTTCGATTCCCAGT
ACCAACACAGTGGCTCACAACTATCCTAACTCCAGTTGCAGGGGATCCAA
TGCCCTCTTCTGACCTCCAAGGGTACAAGGCATACATGTGATGTGATGTA
TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCCNCTNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_i14.g1 MSMg01no522_i14.g1 CHROMAT_FILE:
MSMg01no522_i14.g1 PHD_FILE: MSMg01no522_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:09 2005
         (557 letters)



>mm_chr7_135462256_135463212
          Length = 957

 Score =  957 bits (495), Expect = 0.0
 Identities = 540/569 (94%), Gaps = 23/569 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcatctcaggagattgctacttttcttcatcacaaatagaaagtggcagggcgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 catgcatctcaggagattgctacttttcttcatcacaaatagaaagtggcagggcgttac 271

                                                                       
Query: 61  tgtccagttgctgtccagttgctcgaacacctaaccacacaagactccacagaattcaca 120
           ||||||||||||           ||||||||||||||||||||| ||| |||||||||||
Sbjct: 272 tgtccagttgct-----------cgaacacctaaccacacaagattccgcagaattcaca 320

                                                                       
Query: 121 ctctgggtttttgagatcttcatgatgccaagaggaagatggcaggttgggtacatcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgggtttttgagatcttcatgatgccaagaggaagatggcaggttgggtacatcttc 380

                                                                       
Query: 181 ctaaaggcttataggcagctgaggcgtgagctgggccctagacaagcctcaggagaaagg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaaggcttataggctgctgaggcgtgagctgggccctagacaagcctcaggagaaagg 440

                                                                       
Query: 241 gcccgtgacactgagcaggcacactgag------------gcaagggcagatccaggttt 288
           ||||||||||||||||||||||||||||            ||||||||||||||||||||
Sbjct: 441 gcccgtgacactgagcaggcacactgagcatgttttggaggcaagggcagatccaggttt 500

                                                                       
Query: 289 tgtgagacctaaagcttaaggaatgtgggaaattccctctttcagaccatgaagagcagc 348
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tgtgagacctaaagcttaaggaatgtgggaaattccctcttccagaccatgaagagcagc 560

                                                                       
Query: 349 tgggcgtggtggcacacactcagcgatgtggcggctcaagcagtaggagcctcattagtt 408
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggcgtggtggcgcacactcagcgatgtggcggctcaagcagtaggagcctcattagtt 620

                                                                       
Query: 409 tgaagtcagcctgagctatttatagcaaggtcctgcctcatggagctagagagatggctc 468
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaagtcagtctgagctatttatagcaaggtcctgcctcatggagctagagagatggctc 680

                                                                       
Query: 469 agctgtgatgggcacttgctgctcttacagaggacccaagttcgattcccagtaccaaca 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctgtgatgggcacttgctgctcttacagaggacccaagttcgattcccagtaccaaca 740

                                        
Query: 529 cagtggctcacaactatcctaactccagt 557
           |||||||||||||||||||||||||||||
Sbjct: 741 cagtggctcacaactatcctaactccagt 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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