BAC Information

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BAC

Clone NameMSMg01-522M22
Chromosome7 (Build37)
Map Location 25,076,129 - 25,076,453
singlet/doubletsinglet
Overlap geneZfp61
Upstream geneNlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690
Downstream geneLOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522M22.T7 (MSMg01no522_m22.b1)MSMg01-522M22.TJ (MSMg01no522_m22.g1)
ACCAG593277AG593278
length767766
length of high quality
(start - end)		516 (49 - 564)572 (80 - 651)
definitionCHROMAT_FILE: MSMg01no522_m22.b1 PHD_FILE: MSMg01no522_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:31 2005CHROMAT_FILE: MSMg01no522_m22.g1 PHD_FILE: MSMg01no522_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATC
CGCGGAATTCAGTCGCCCTTCGAGTCTTCAGGCCCATCAGGGCATTCACA
CCGGAGAGAAATCATACGTTTGTACTATGTGTGGGAAAGGCTATACTCTG
AATTCAAATCTCCAAGTCCACTTGAGAGTCCACACAGGGGAGAAGCCGTA
CAGTTGTGACGTGTGTGGGAAAGGCTTCAGTCGCTCTTCACAGCTACAGT
CCCATCAGAGAGTCCACACGGGGGAGAAGCCTTACAAGTGTGATGTGTGT
GGTAAGAGCTTTGGTTGGCGGTCAAATCTTATAATTCATCACAGAATCCA
CAGCAGTGGTAAACCTTACAAGAGCAAGAGAGATGATAAAAACATCAAGG
AATCCACTCAGGAAAAATGTTCTATAAAATAGTGCTTGAAAAAACTCGTG
TCATGTGGATTCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTAA
TTACACTTTACAATAGTTTAGTTTGGGAGCTGTANGGATGGGTGTGTGTG
TGTGTGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNTN
NNNNTGTNNNNNTNNNTTTTTTTTTTTTTTNTNTTTTTTTNTTTTTTTTT
TNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNN
TNNTTTTTTTNNNTTTN

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGGATTTGGAGACCAG
ACCTCTGGCCAAAGGCTTTCCCACACGTGTCACATTTGTAGGGCTTCTCC
CCGGTGTGCACCCTCTGGTGGGCATGGAGGTTCCAGGCCTGACTAAATCG
CTTCTGGCATGCATTGCATTTGAATGGCTTCTTGCCAGTTTCGACTCTTT
GATGAGCCTGTAGCCCAGAGACAAGGCTGAAGCCTTTCCCACACTCCTCA
CATTTATAGGGTTTCTCTCCTGTGTGGACTCTCTGGTGGGTGTGAAGGTT
TGAGCTGCAGCTGAAGCGTTTGCCACAGTCTCCACACTTATATGGCTTCT
GATCTGTGTGAATTCTCTCGTGGGCCTGGAGGTGTGACAACTGAGTGAAG
CCCTTCCCACAGCTGTCGCACTGATAAGGCTTGTCCCCTGTGTGCACTCT
CTGATGAGTCTGAAGGTATGAGATCCGACTGAAGCCCTTTCCACACACAC
TGCAGACAAATGGCTTCTCTCCTGTATGGACCCTCTGGTGTCTTTGGAAG
CTTGAGGCTGAACTGAAACCCTTCCCACACTCTTCACACTTATATGGCTT
CTCTCCTGTGTGGACCCGCTGATGGCTGTGGAAGTTGCATCTCAAGTTGA
AGGGCTTCTCATAATCACACTTGGACGGTTTGCTCTTAGTGTGGACTCTC
TGGTGGATGTGAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_m22.b1 MSMg01no522_m22.b1 CHROMAT_FILE:
MSMg01no522_m22.b1 PHD_FILE: MSMg01no522_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:31 2005
         (516 letters)



>mm_chr7_25076129_25077044
          Length = 916

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcagtcgcccttcgagtcttcaggcccatcagggcattcacaccggagagaaatca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattcagtcgcccttcgagtcttcaggcccatcagggcattcacaccggagagaaatca 266

                                                                       
Query: 67  tacgtttgtactatgtgtgggaaaggctatactctgaattcaaatctccaagtccacttg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacgtttgtactatgtgtgggaaaggctatactctgaattcaaatctccaagtccacttg 206

                                                                       
Query: 127 agagtccacacaggggagaagccgtacagttgtgacgtgtgtgggaaaggcttcagtcgc 186
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agagtccacacgggggagaagccgtacagttgtgacgtgtgtgggaaaggcttcagtcgc 146

                                                                       
Query: 187 tcttcacagctacagtcccatcagagagtccacacgggggagaagccttacaagtgtgat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tcttcacagctacagtcccatcagagagtccacacgggggagaagccttacaagtgtgat 86

                                                                       
Query: 247 gtgtgtggtaagagctttggttggcggtcaaatcttataattcatcacagaatccacagc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  gtgtgtggtaagagctttggttggcggtcaaatcttataattcatcacagaatccacagc 26

                                    
Query: 307 agtggtaaaccttacaagagcaaga 331
           |||||||||||||||||||||||||
Sbjct: 25  agtggtaaaccttacaagagcaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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