BAC Information

Click to search

BAC

Clone NameMSMg01-523E11
Chromosome7 (Build37)
Map Location 37,250,156 - 37,384,080
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523E11.T7 (MSMg01no523_e11.b1)MSMg01-523E11.TJ (MSMg01no523_e11.g1)
ACCAG593636AG593637
length745761
length of high quality
(start - end)
425 (48 - 472)405 (76 - 480)
definitionCHROMAT_FILE: MSMg01no523_e11.b1 PHD_FILE: MSMg01no523_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:08 2005CHROMAT_FILE: MSMg01no523_e11.g1 PHD_FILE: MSMg01no523_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,383,750 - 37,384,080)(37,250,156 - 37,250,560)
sequence
NTTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACATTGTCCAATGTTCACAAGAAACAGAGGATTATGGGAAGC
CATATAAGAGAGAACCAGGTTTTCAGTGTAGATTTTAGACAAAGTCCTAG
GGGAAAAAGGGGGGAAGGATGTGGGAAGCAGTTTCCGCTGTGCCTGCGTG
GCCTAATTGGTAAACAAGCGATGTGCGCATGTGCGAGGGTGTTTTCGTGC
CAAGTCACGGCCCATCCCGGGGCATGGTGATGAGGCTCTGGGAGGTGTGG
ACACGCCACACTAAGGTGTATATAAGCAGCGCCTTTTTGGTGCTTGGGGT
CTTCCTCTTCATGTTGAAACTGGTGTAATAAAGTTGCTGCAGAAGGATCC
AGTTTCTCACACGTGTGTTCTTGCTGGCGAGACAATAGCGCGTGTGAGAG
AAGAATATCTGAGAAAACTCAAGAGTCCCCACATAGGGTGATGAACTGAC
CTTTATCCTAAATCAGTGGTTCTTAATCTTCCTAATGCTGTGACTGCTCC
TCACGTTGTGGTGACCACCCACCCCCCAACCATAAACTTATTTTTGCTGA
ATCCTCATAACTATAATTTTGCTACTATTAAGGATTATAATGTGAATATT
TTTGGAGATAGAGATTTGACCAAGGGTTTGTGAGCCCCCGATGGAGAACC
ACTACCCTAATTTATGAGCGGAGAGCTCCTCTAAGGCCAAAAGAA
GCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTCTATGGACTCATGGCACAAAG
AGTGAGAGAACTAGAAGAGGAAAGTAGAAGATTCTATTCTGAAGTTTTCA
GAGTGCTTGTGGAGTAACATCATAGAGTGTGAACATATCATGTGGGAAGG
TGGGCACATGGCAAACCACAGGGACCAGAACCAAATGAATAAGACCTTTC
AGCTGACAATCAAGGTGGAAATAAAATACTTTCTAAACCATAGTGGTGAG
GACTAATCTTGGAAGAGAACTTATCAAGTTCCCCCTGGGAAGAAAGAACC
TCAGTTGATGAGTTGCCTACATCAAATTGGCCCTAGGATGTCTGTATGGC
ATGTTCTTGATGGTTGGTTGATGTGAGAGGGCCCAGCCTATGGACTGTGT
CAACCCTTGGCAGGTGGCCCTGGGGTGTGTAAGAAAGGTGATCCTGAAAA
CAAGCCAGGAAGCAACACTCCTCCATGAGTCCTGCCTCCAGGTTTCTTCT
TGAAGTTCCTGCCCAACGCCCCTCCATGATGGTAAAACGAATCTTCTTCT
TCCCATGTTGCTTCAGGGCATTGGATTTTTCACAGCTCTCTAATAAGGAT
ACTACTATGGGTCCTCCTATTGATTTTTAAGAAAAAAAGTTTTTAAAGGG
TAAAAAGGAGTAAAAAAATAAAATGGGGGGAACTCATTAAAACTTATTGC
AAATAAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_e11.b1 MSMg01no523_e11.b1 CHROMAT_FILE:
MSMg01no523_e11.b1 PHD_FILE: MSMg01no523_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:08 2005
         (425 letters)



>mm_chr7_37383750_37384574
          Length = 825

 Score =  609 bits (315), Expect = e-178
 Identities = 327/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacattgtccaatgttcacaagaaacagaggattatgggaagccatataagaga 64
           ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gaattccacattgtaaaatgtccacaagaaacagaggattatgggaagccatataagaga 272

                                                                       
Query: 65  gaaccaggttttcagtgtagattttagacaaagtcctaggggaaaaaggggggaaggatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaccaggttttcagtgtagattttagacaaagtcctaggggaaaaaggggggaaggatg 212

                                                                       
Query: 125 tgggaagcagtttccgctgtgcctgcgtggcctaattggtaaacaagcgatgtgcgcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgggaagcagtttccgctgtgcctgcgtggcctaattggtaaacaagcgatgtgcgcatg 152

                                                                       
Query: 185 tgcgagggtgttttcgtgccaagtcacggcccatcccggggcatggtgatgaggctctgg 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 151 tgcgagggtgttttcgtgccaagtcatggcccatcccggggcatggtgatgaggctctgg 92

                                                                       
Query: 245 gaggtgtggacacgccacactaaggtgtatataagcagcgcctttttggtgcttggggtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  gaggtgtggacacgccacactaaggtgtatataagcagcgcctttttggtgcttggggtc 32

                                          
Query: 305 ttcctcttcatgttgaaactggtgtaataaa 335
           |||||||||||||||||||||||||||||||
Sbjct: 31  ttcctcttcatgttgaaactggtgtaataaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no523_e11.g1 MSMg01no523_e11.g1 CHROMAT_FILE:
MSMg01no523_e11.g1 PHD_FILE: MSMg01no523_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:08 2005
         (405 letters)



>mm_chr7_37249956_37250760
          Length = 805

 Score =  760 bits (393), Expect = 0.0
 Identities = 402/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctatggactcatggcacaaagagtgagagaactagaagaggaaagtagaagattct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctatgggctcatggcacaaagagtgagagaactagaagaggaaagtagaagattct 260

                                                                       
Query: 61  attctgaagttttcagagtgcttgtggagtaacatcatagagtgtgaacatatcatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctgaagttttcagagtgcttgtggagtaacatcatagagtgtgaacatatcatgtgg 320

                                                                       
Query: 121 gaaggtgggcacatggcaaaccacagggaccagaaccaaatgaataagacctttcagctg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gaaggtgggcacatggcaaaccacagggatcagaaccaaatgaataagacctttcagctg 380

                                                                       
Query: 181 acaatcaaggtggaaataaaatactttctaaaccatagtggtgaggactaatcttggaag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaatcaaggtggaaatagaatactttctaaaccatagtggtgaggactaatcttggaag 440

                                                                       
Query: 241 agaacttatcaagttccccctgggaagaaagaacctcagttgatgagttgcctacatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacttatcaagttccccctgggaagaaagaacctcagttgatgagttgcctacatcaa 500

                                                                       
Query: 301 attggccctaggatgtctgtatggcatgttcttgatggttggttgatgtgagagggccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attggccctaggatgtctgtatggcatgttcttgatggttggttgatgtgagagggccca 560

                                                        
Query: 361 gcctatggactgtgtcaacccttggcaggtggccctggggtgtgt 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctatggactgtgtcaacccttggcaggtggccctggggtgtgt 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)